Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16c14r
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    26   5.4  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    26   5.4  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    26   7.1  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   9.4  

>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +3

Query: 3   NYIKLTWLKCCIIMNKRMIVYTPLGFQLSKLN*QVIQET*PSACMLLKNS 152
           N+I L       +     + YTP  F  SKL  Q   E   SAC L KN+
Sbjct: 8   NFIYLNNTLLSEVPEPNSVFYTPKCFSNSKLPHQSDLEEPSSACSLSKNT 57


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 773 CRSSDGYIRIFVENCVSNIPT 711
           C SSDG++RIF  + V   PT
Sbjct: 271 CGSSDGFVRIFTVDKVRVAPT 291


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = -3

Query: 772 VDPQTGIFVYSLKTVSP 722
           VDP+TG++ ++++T SP
Sbjct: 381 VDPETGLYSFNIETSSP 397


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 499 HKQLRLRPHASRGRPTPMSFDNHPLAT 419
           H QL+L    S+GRPT   FD  P AT
Sbjct: 23  HTQLKL----SQGRPTYTFFDGPPFAT 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,256
Number of Sequences: 5004
Number of extensions: 54978
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)