Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16c14r
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.61 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.61 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   7.5  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   9.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 265 PPDGEWFPSPMDFSNARGRAKPLPTAENVMIY 360
           PPD  W P  + F+NA G  + +    NV+IY
Sbjct: 104 PPDKVWKPDIVLFNNADGNYE-VRYKSNVLIY 134


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = -1

Query: 288 RKPLTIRWAVCSSAY---KGNKKNHNIHCIKTEIKIVREN 178
           RK  T    V SS     K  +KN N HC+ TE  +V  N
Sbjct: 795 RKTATTTQPVISSRKEQKKSEEKNINDHCVTTEQSVVVTN 834


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 420 PAYIQLSHLLDRLSFSSWLQI 358
           P++I ++ LLD+  F  WLQ+
Sbjct: 638 PSHI-MAGLLDKFFFPKWLQV 657


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 524 SEGSDSRYTQTVETQTSRLKGAADADELRQPPARDL 417
           S+ +  ++TQ +   +S L+     D L  PP R +
Sbjct: 388 SKHNTQQFTQYIPESSSNLQEKTKIDLLEIPPIRKI 423


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 289 SPMDFSNARGRAKPLPTAENVMIYLQPRGKTKSI 390
           SP   +N   R  P     +  IYL PR   K++
Sbjct: 3   SPQKLANKFYRISPQILKNDKRIYLSPRTPIKNV 36


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 62  NNHSFIHYNTTLQPCQFYII 3
           NN+++ +YN   +P  + II
Sbjct: 320 NNYNYNNYNNNYKPLYYNII 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,627
Number of Sequences: 438
Number of extensions: 4539
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)