Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16c14f
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    33   0.047
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.77 
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    28   1.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.1  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    25   9.5  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   9.5  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 33.1 bits (72), Expect = 0.047
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
 Frame = +2

Query: 191 MNIQELKSAANRSTTLANDVCNVLGACEQRLQQLETAVLPLYGDTARLQLV---HQNMER 361
           + +Q +    NR+    N+V ++LG C   L +L T         +  QL+   H   + 
Sbjct: 502 LTVQTVLYLKNRNFQTGNEVMSILGPCLSFLMKLSTHKNERIACLSASQLITVCHIFSDT 561

Query: 362 T-AKALDHVINYYMVSRELADLIQAGPHTTTTETLNIYLEALDKLAD-AQTYFNKNNPQS 535
           T  K +  +   Y+V+   + +++ GP +     L   L  L   AD ++ + N  N  +
Sbjct: 562 TLIKPVKELFQKYLVNDLPSSILKLGPQSPAFTLLRDILLLLKDYADLSEPWENVANQFT 621

Query: 536 V---ELENINQL 562
           V   ELENI  L
Sbjct: 622 VSFDELENIRVL 633


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 797 PSGLQREPGPLPTASPPQPGAPRPA 723
           P+G+   P PLP A+P  P AP PA
Sbjct: 460 PAGMPAAP-PLPPAAPAPPPAPAPA 483


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 31/158 (19%), Positives = 71/158 (44%), Gaps = 1/158 (0%)
 Frame = +2

Query: 149 EKKFEIEMKLRKEIMNIQELKSAANRSTTLANDVCNVLGACEQRLQQLETAVLPLYGDTA 328
           ++ F+   +  ++++ I+ L+S ++   T  ND+ + +   ++  + LE           
Sbjct: 254 DELFKSTEEYEQQMITIRHLESQSDIINTTINDLKSQMTITDESSEDLEKLHSNFAEKVK 313

Query: 329 RLQLVHQNMERTAKALDHVINYYMVSRELADLIQAGPHTTTTETLNIYLEALDKL-ADAQ 505
             Q +++++E+    L+ ++      REL + +     T     +   +E+L+KL     
Sbjct: 314 EEQELYKSLEKKRSDLESLLKS---RRELLEKL-----TGDLGKIQGEIESLEKLKVKKS 365

Query: 506 TYFNKNNPQSVELENINQLYNTGVSKLESAFEELLNRN 619
           T  N    + V   NIN++   G+    S +  L+N+N
Sbjct: 366 TMIN----EIVHRYNINEINEEGIMTEVSKYASLVNKN 399


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 776  PGPLPTASPPQPGAPRPARCTTTSCRPRSHSPH*NLLP 663
            P P+PTA  P   AP     + ++ R    SPH N  P
Sbjct: 1228 PVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASP 1265


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 554 LYSLAQHSVDYSY*STSEHQPAYPKP 477
           LYSL++ S++YS  S   +   YP+P
Sbjct: 437 LYSLSESSINYSTQSPMYYNYNYPQP 462


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 641 LWAKEVSCYDSIALQRHFPVLILP 570
           LWAKE   ++S  +   F +L+LP
Sbjct: 533 LWAKEYELFNSWLMPSVFMILVLP 556


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,202
Number of Sequences: 5004
Number of extensions: 59467
Number of successful extensions: 213
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)