Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16c14f
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.81 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   4.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   4.3  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   7.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   7.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.6  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 368 KALDHVINYYMVSRELADLIQA 433
           +AL  V NY++VS  +ADL+ A
Sbjct: 215 RALQTVTNYFIVSLAVADLLVA 236


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 748 GGLAVGSGPGSRCSP 792
           GG+A+G+  G  C P
Sbjct: 280 GGVAIGTAAGMMCQP 294


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 269 MRRAHYIHHSPVSYSGLRPTSALVYS 192
           +   H+ HH+ V +  L+P + L+ S
Sbjct: 19  LESVHHCHHNGVVHRDLKPENLLLAS 44


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 333 NLAVSPYKGNTAVSSCWSLCS 271
           N AV+PY  N  +S    LCS
Sbjct: 91  NKAVAPYPPNHPLSGSKHLCS 111


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 333 NLAVSPYKGNTAVSSCWSLCS 271
           N AV+PY  N  +S    LCS
Sbjct: 91  NKAVAPYPPNHPLSGSKHLCS 111


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 146 VEKKFEIEMKLRKEIMNIQELKSAANRSTTLANDVCNVL 262
           ++K+F+ +     EI +   +K  AN +    NDV NVL
Sbjct: 44  MDKQFKNKSLPVIEIWDQMTVKELANSAKRDINDVLNVL 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,616
Number of Sequences: 438
Number of extensions: 4808
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)