Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16c12r
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc...   384   e-107
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    29   0.67 
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    29   0.89 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    28   1.6  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   2.7  
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch...    27   4.7  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   4.7  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   6.3  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   6.3  

>SPCC1919.09 |tif6||translation initiation factor
           eIF6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score =  384 bits (944), Expect = e-107
 Identities = 173/236 (73%), Positives = 214/236 (90%)
 Frame = -3

Query: 883 KNNNEVGVFSKLTNTYCLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIGRMTVGNK 704
           +N+NE+GVFS LTN+Y LVA+GGSENFYSVFEAEL + +PV+H ++GG RIIGR+T GN+
Sbjct: 8   ENSNEIGVFSNLTNSYALVALGGSENFYSVFEAELGDVVPVVHTTIGGTRIIGRLTCGNR 67

Query: 703 NGLLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIACNDYVALVHPDLDKDTEE 524
            GLLVPSSTTD ELQH+RNSLP+ VK+QRV+ERLSALGN++ACNDYVALVHPD++++TEE
Sbjct: 68  KGLLVPSSTTDNELQHLRNSLPDPVKIQRVDERLSALGNIVACNDYVALVHPDIERETEE 127

Query: 523 ILADTLNVEVFRQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQVPLVAGTVN 344
           I+AD L+VEVFRQT+AGNVL GSY ALSN+G LVHP+T+IQ+QDELSSLLQVPLVAGT+N
Sbjct: 128 IIADVLDVEVFRQTVAGNVLTGSYCALSNQGALVHPRTSIQEQDELSSLLQVPLVAGTIN 187

Query: 343 RGSDVVAAGMVVNDWCAFCGLDTTSTEISVIESVFKLNDAKPTAITSTMRASLIDS 176
           RGSDV+ AG+VVNDWCAF GLDTT+TE++V ES+FKL DA+P+AI S  R +L++S
Sbjct: 188 RGSDVIGAGLVVNDWCAFAGLDTTATELAVCESIFKLQDAQPSAIISN-RDTLVES 242


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -3

Query: 685 SSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIACNDYVALVHP 548
           SST  ++   I +   +N  L +V +R S  G V +C+D+  LVHP
Sbjct: 145 SSTISSDACFIASIETKN-PLAKVWQRTSPQGTVSSCDDFSYLVHP 189


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 225 ASFNLKTLSITEISV-DVVSSPQNAHQS-LTTIPAATTSLPLLTVPAT 362
           AS    T S+T  ++  +V  P  +H S  TT+P  T+     TVP T
Sbjct: 52  ASTETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPT 99


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 4/132 (3%)
 Frame = +3

Query: 255 TEISVDVVSSPQNAHQSLTTIPAATTSLPLLTVPATKGTXXXXXXXXXXCIFVFG--CTS 428
           T  SV   S+P  +    TT    +TS+P  + P T              I       TS
Sbjct: 429 TSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTS 488

Query: 429 PPRLLNAV*EPTSTFPAIVCLNTSTFNVSAN--ISSVSLSKSGCTSAT*SLQAMTLPRAL 602
            P         TS       + +S + +S++  ++S  ++ + CT++T  L   T   + 
Sbjct: 489 TPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTST 548

Query: 603 SRSSTRCNFTFS 638
             ++T C  + S
Sbjct: 549 PLATTNCTTSTS 560


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = -3

Query: 778 AETIPVIHASVGGCRIIGRMT-VGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERL 602
           ++ IP I AS+   R+   MT +G  + L++P++    +   ++NS+   ++L+R  +RL
Sbjct: 324 SQKIPAIKASLSQ-RVSSVMTELGVSSRLIMPTAKNFEKFVELQNSIVSLLELKRKVDRL 382

Query: 601 S 599
           S
Sbjct: 383 S 383


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
 Frame = +3

Query: 492 NTSTFNVSANISSVSLSKSGCTSAT*SLQAMTLPRALSRSSTRCNFTFSGRLFLMCCNSV 671
           NTS+F  S+ ISS SLS S     T  + + + P  +S SS+  +FT S    L    S 
Sbjct: 224 NTSSFLPSSVISSASLSSSS-VLPTSIITSTSTPVTVS-SSSLSSFTPSYSTNLTTTGST 281

Query: 672 SVVEDGT--KRPFLFPTVILPMIRQPPTLACITGMVSANSASNTL 800
           +     T    PF   + ++P    P +++  T   S++S + TL
Sbjct: 282 TTTGSATVSSSPFYSNSSVIP-TSVPSSVSSFTS--SSSSYTTTL 323


>SPCC1442.09 |trp3||anthranilate synthase component
           I|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 489

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 418 PKTNIQDQDELSSLLQVPLVAGTVNRGSDVVAAGMVVNDWCAFCGLDTTSTE 263
           P+   +++DE  +     L+A   +R   V+   +  ND    C LDTTS +
Sbjct: 300 PRGKTKEEDEAYAK---DLLASVKDRAEHVMLVDLARNDVSRVCDLDTTSVD 348


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/74 (24%), Positives = 35/74 (47%)
 Frame = -3

Query: 574 NDYVALVHPDLDKDTEEILADTLNVEVFRQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQ 395
           N  + L  P+  +   +++A T  +       +GN+L+    +L +   ++ P   + D 
Sbjct: 186 NGEIILRDPNSFQPVNKVVAHTGTISDI--DTSGNLLLSCGYSLRHGTYMLDPFVKVWDL 243

Query: 394 DELSSLLQVPLVAG 353
             LSSL+ +P  AG
Sbjct: 244 RNLSSLVPIPFPAG 257


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/59 (23%), Positives = 32/59 (54%)
 Frame = +3

Query: 456 EPTSTFPAIVCLNTSTFNVSANISSVSLSKSGCTSAT*SLQAMTLPRALSRSSTRCNFT 632
           +P+S+  +     TST + S+ +SS +L+ S  ++ + +    ++   +S S +  +FT
Sbjct: 109 DPSSSSSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTSSFT 167


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 456  EPTSTFPAIVCLNTSTFNVSANISSVSLSKSGCTSAT*SLQAMTLPRALSRSST 617
            E T+++ + + + +ST   S   SSVS + S   S+  S    T P+  S SST
Sbjct: 912  EGTTSYSSNITVTSSTLKPSLT-SSVSTASSYIASSASSNTLSTEPKTFSSSST 964


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,746,697
Number of Sequences: 5004
Number of extensions: 78895
Number of successful extensions: 242
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)