Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16c12r
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   0.70 
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              25   1.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.9  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   4.9  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   4.9  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 143 MFNKYYIISSVLLFWITKTQFDLL 72
           + +KY +I+S  L W+ +T +D L
Sbjct: 28  ILSKYQLITSTTLNWLPRTHYDHL 51


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 685 SSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIAC 575
           S+ T  EL+ +R+S    +KL   EE     G  +AC
Sbjct: 38  SNMTFHELKKLRDSSEARIKLINEEENFRNYGCFLAC 74


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = +3

Query: 279 SSPQNAHQSLTTIPAATTSLPLLTVPATKGTXXXXXXXXXXCIFVFGCTS 428
           SSPQ++  S +T PAA T+  +    +                  FG TS
Sbjct: 67  SSPQHSGSSASTSPAARTTSSMYPYVSAAAAHHHHQQQQAVAAAAFGATS 116


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 563  STCTS*LRQRHRRNISRHIKRGSIQTNNSGKRTCW 459
            +T +S   + HRR +S HI        ++ +RT W
Sbjct: 1316 TTVSSGSSEDHRRPLSEHIYSSIDSDYSTLERTAW 1350


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 682 STTDTELQHIRNSLPENV 629
           ST D  L  IRN +PEN+
Sbjct: 182 STLDAILDIIRNMVPENL 199


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/54 (24%), Positives = 22/54 (40%)
 Frame = -3

Query: 781 LAETIPVIHASVGGCRIIGRMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQ 620
           + +T    H    G R      + N+N +   +   + ELQ +R  L  N+  Q
Sbjct: 20  MCQTFTYSHGWTNGKRSTSLEELANRNAIQSDNVFANCELQKLRLLLQGNINNQ 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,097
Number of Sequences: 438
Number of extensions: 5735
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)