Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16c12f
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc... 372 e-104
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 29 0.54
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.3
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 28 1.3
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 2.2
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch... 27 3.8
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 27 3.8
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 26 5.0
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 5.0
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 5.0
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 25 8.8
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 8.8
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 8.8
>SPCC1919.09 |tif6||translation initiation factor
eIF6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 372 bits (916), Expect = e-104
Identities = 166/219 (75%), Positives = 201/219 (91%)
Frame = +2
Query: 101 MAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIG 280
MA+R QFEN+NE+GVFS LTN+Y LVA+GGSENFYSVFEAEL + +PV+H ++GG RIIG
Sbjct: 1 MALRAQFENSNEIGVFSNLTNSYALVALGGSENFYSVFEAELGDVVPVVHTTIGGTRIIG 60
Query: 281 RMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIACNDYVALVHPD 460
R+T GN+ GLLVPSSTTD ELQH+RNSLP+ VK+QRV+ERLSALGN++ACNDYVALVHPD
Sbjct: 61 RLTCGNRKGLLVPSSTTDNELQHLRNSLPDPVKIQRVDERLSALGNIVACNDYVALVHPD 120
Query: 461 LDKDTEEILADTLNVEVFRQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQVP 640
++++TEEI+AD L+VEVFRQT+AGNVL GSY ALSN+G LVHP+T+IQ+QDELSSLLQVP
Sbjct: 121 IERETEEIIADVLDVEVFRQTVAGNVLTGSYCALSNQGALVHPRTSIQEQDELSSLLQVP 180
Query: 641 LVAGTVNRGSDVVAAGMVVNDWCAFCGLDTTSTEISVIE 757
LVAGT+NRGSDV+ AG+VVNDWCAF GLDTT+TE++V E
Sbjct: 181 LVAGTINRGSDVIGAGLVVNDWCAFAGLDTTATELAVCE 219
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 29.5 bits (63), Expect = 0.54
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 320 SSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIACNDYVALVHP 457
SST ++ I + +N L +V +R S G V +C+D+ LVHP
Sbjct: 145 SSTISSDACFIASIETKN-PLAKVWQRTSPQGTVSSCDDFSYLVHP 189
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 1.3
Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 4/132 (3%)
Frame = -2
Query: 750 TEISVDVVSSPQNAHQSLTTIPAATTSLPLLTVPATKGTXXXXXXXXXSCIFVFG--CTS 577
T SV S+P + TT +TS+P + P T + I TS
Sbjct: 429 TSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTS 488
Query: 576 PPRLLNAV*EPTSTFPAIVCLNTSTFNVSAN--ISSVSLSKSGCTSAT*SLQAMTLPRAL 403
P TS + +S + +S++ ++S ++ + CT++T L T +
Sbjct: 489 TPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTST 548
Query: 402 SRSSTRCNFTFS 367
++T C + S
Sbjct: 549 PLATTNCTTSTS 560
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 227 AETIPVIHASVGGCRIIGRMT-VGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERL 403
++ IP I AS+ R+ MT +G + L++P++ + ++NS+ ++L+R +RL
Sbjct: 324 SQKIPAIKASLSQ-RVSSVMTELGVSSRLIMPTAKNFEKFVELQNSIVSLLELKRKVDRL 382
Query: 404 S 406
S
Sbjct: 383 S 383
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.5 bits (58), Expect = 2.2
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Frame = -2
Query: 513 NTSTFNVSANISSVSLSKSGCTSAT*SLQAMTLPRALSRSSTRCNFTFSGRLFLMCCNSV 334
NTS+F S+ ISS SLS S T + + + P +S SS+ +FT S L S
Sbjct: 224 NTSSFLPSSVISSASLSSSS-VLPTSIITSTSTPVTVS-SSSLSSFTPSYSTNLTTTGST 281
Query: 333 SVVEDGT--KRPFLFPTVILPMIRQPPTLACITGMVSANSASNTL 205
+ T PF + ++P P +++ T S++S + TL
Sbjct: 282 TTTGSATVSSSPFYSNSSVIP-TSVPSSVSSFTS--SSSSYTTTL 323
>SPCC1442.09 |trp3||anthranilate synthase component
I|Schizosaccharomyces pombe|chr 3|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 587 PKTNIQDQDELSSLLQVPLVAGTVNRGSDVVAAGMVVNDWCAFCGLDTTSTE 742
P+ +++DE + L+A +R V+ + ND C LDTTS +
Sbjct: 300 PRGKTKEEDEAYAK---DLLASVKDRAEHVMLVDLARNDVSRVCDLDTTSVD 348
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 26.6 bits (56), Expect = 3.8
Identities = 18/74 (24%), Positives = 35/74 (47%)
Frame = +2
Query: 431 NDYVALVHPDLDKDTEEILADTLNVEVFRQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQ 610
N + L P+ + +++A T + +GN+L+ +L + ++ P + D
Sbjct: 186 NGEIILRDPNSFQPVNKVVAHTGTISDI--DTSGNLLLSCGYSLRHGTYMLDPFVKVWDL 243
Query: 611 DELSSLLQVPLVAG 652
LSSL+ +P AG
Sbjct: 244 RNLSSLVPIPFPAG 257
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/59 (23%), Positives = 32/59 (54%)
Frame = -2
Query: 549 EPTSTFPAIVCLNTSTFNVSANISSVSLSKSGCTSAT*SLQAMTLPRALSRSSTRCNFT 373
+P+S+ + TST + S+ +SS +L+ S ++ + + ++ +S S + +FT
Sbjct: 109 DPSSSSSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTSSFT 167
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 756 SITEISV-DVVSSPQNAHQS-LTTIPAATTSLPLLTVPAT 643
S+T ++ +V P +H S TT+P T+ TVP T
Sbjct: 60 SVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPT 99
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -2
Query: 549 EPTSTFPAIVCLNTSTFNVSANISSVSLSKSGCTSAT*SLQAMTLPRALSRSST 388
E T+++ + + + +ST S SSVS + S S+ S T P+ S SST
Sbjct: 912 EGTTSYSSNITVTSSTLKPSLT-SSVSTASSYIASSASSNTLSTEPKTFSSSST 964
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = +2
Query: 29 NPREESHHIVKYIIREK-VKRKTKIMAVRVQFE---NNN 133
NPRE +I Y++ EK + + IM R+QF+ NNN
Sbjct: 643 NPREVLENIRDYLVTEKPLSFEECIMWARLQFDKFFNNN 681
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +2
Query: 290 VGNKNGLLVPSSTTDTELQHIRNS-LPENVKLQRVEERLSALGNVIACN 433
VGN + L+ T TELQ I + L L L LG+ CN
Sbjct: 944 VGNNDNLIDSIKTPHTELQKITDHVLKGTTSLANHTNELLGLGDESLCN 992
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 327 VEDGTKRPFLFPTVILPMIRQPPTLACITGMVSANSASNTL*KFSEPPIA 178
++DGT P V LP + PT+ +G++ SN++ F PP A
Sbjct: 409 LKDGTTNTLQIPAVRLPSLPSSPTIKNPSGLLL--KRSNSI-DFPTPPKA 455
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,265,256
Number of Sequences: 5004
Number of extensions: 69635
Number of successful extensions: 222
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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