Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16c12f
(757 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99709-5|CAB16860.1| 246|Caenorhabditis elegans Hypothetical pr... 303 1e-82
AF068712-1|AAC17779.1| 500|Caenorhabditis elegans Hypothetical ... 29 4.7
Z49909-5|CAD59140.1| 594|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical pr... 28 6.2
AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell death-re... 28 6.2
AL132859-4|CAB60492.1| 365|Caenorhabditis elegans Hypothetical ... 28 6.2
Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr... 28 8.2
AF497825-1|AAM18103.1| 670|Caenorhabditis elegans putative Na-H... 28 8.2
AF016447-15|AAR30208.1| 651|Caenorhabditis elegans Na/h exchang... 28 8.2
AF016447-14|AAG24015.2| 670|Caenorhabditis elegans Na/h exchang... 28 8.2
>Z99709-5|CAB16860.1| 246|Caenorhabditis elegans Hypothetical
protein C47B2.5 protein.
Length = 246
Score = 303 bits (743), Expect = 1e-82
Identities = 135/219 (61%), Positives = 182/219 (83%)
Frame = +2
Query: 101 MAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIG 280
MA+RV +E +N+VGVF LTN+YCLV +GG++NFYS+ EAEL++ IPV+H S+ RI+G
Sbjct: 1 MALRVDYEGSNDVGVFCTLTNSYCLVGVGGTQNFYSILEAELSDLIPVVHTSIASTRIVG 60
Query: 281 RMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIACNDYVALVHPD 460
R+TVGN++GLLVP++TTD ELQH+RNSLP+ V ++RV+ERLSALGNVIACND+VA+VH +
Sbjct: 61 RLTVGNRHGLLVPNATTDQELQHLRNSLPDEVAIRRVDERLSALGNVIACNDHVAIVHAE 120
Query: 461 LDKDTEEILADTLNVEVFRQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQVP 640
+ +TE+ L + L VEVFR ++A N LVGSY LS+ G LV +T + Q E+++LLQ+P
Sbjct: 121 ISAETEQALVEVLKVEVFRVSLAQNSLVGSYCILSSNGCLVAARTPPETQREIAALLQIP 180
Query: 641 LVAGTVNRGSDVVAAGMVVNDWCAFCGLDTTSTEISVIE 757
+VAGT NRGS+++ AGMVVNDW AFCGLD+TSTE+SV+E
Sbjct: 181 VVAGTCNRGSELIGAGMVVNDWVAFCGLDSTSTELSVVE 219
>AF068712-1|AAC17779.1| 500|Caenorhabditis elegans Hypothetical
protein T09H2.1 protein.
Length = 500
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Frame = +2
Query: 365 PENVKLQRVE-ERLSALGNVIACNDYVALVHPDLDKDTEEILADTLNVEVFRQTIAGNVL 541
PE VK+ R E L+ I+ D + + + + + +A LNV +FRQT +
Sbjct: 328 PEVVKIAREELVHLTGGHRSISLTDKTSTPYLNAVINEVQRIASILNVNIFRQTSEDTTV 387
Query: 542 ----VGSYTALSNRGGLVHPKTNI 601
+ + TAL+ L+H N+
Sbjct: 388 NGQPIAAGTALTTHLSLIHTDENL 411
>Z49909-5|CAD59140.1| 594|Caenorhabditis elegans Hypothetical
protein C14A4.4b protein.
Length = 594
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 278 GRMTVGNKNGLLVPSSTTDTELQHIRNSLPE-NVKLQRVEERLSALGNVIACNDYVALVH 454
G V NGL P + D EL NS P N ++R E+RL+AL N + + A+
Sbjct: 40 GAGLVRESNGL--PKAGADYELY---NSYPTFNTFMKRSEQRLNALMNKVTKSIGCAMRV 94
Query: 455 PDLDKDTE 478
PD+ E
Sbjct: 95 PDVGSSVE 102
>Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical
protein C14A4.4a protein.
Length = 876
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 278 GRMTVGNKNGLLVPSSTTDTELQHIRNSLPE-NVKLQRVEERLSALGNVIACNDYVALVH 454
G V NGL P + D EL NS P N ++R E+RL+AL N + + A+
Sbjct: 40 GAGLVRESNGL--PKAGADYELY---NSYPTFNTFMKRSEQRLNALMNKVTKSIGCAMRV 94
Query: 455 PDLDKDTE 478
PD+ E
Sbjct: 95 PDVGSSVE 102
>AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell
death-related nuclease 3 protein.
Length = 876
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 278 GRMTVGNKNGLLVPSSTTDTELQHIRNSLPE-NVKLQRVEERLSALGNVIACNDYVALVH 454
G V NGL P + D EL NS P N ++R E+RL+AL N + + A+
Sbjct: 40 GAGLVRESNGL--PKAGADYELY---NSYPTFNTFMKRSEQRLNALMNKVTKSIGCAMRV 94
Query: 455 PDLDKDTE 478
PD+ E
Sbjct: 95 PDVGSSVE 102
>AL132859-4|CAB60492.1| 365|Caenorhabditis elegans Hypothetical
protein Y39C12A.8 protein.
Length = 365
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +2
Query: 362 LPENVKLQRVEERLSALGNVIACNDYVALVHPDLDKDTEEI 484
+P++ K +E+ +GN+ C D+ +++ D +EI
Sbjct: 3 IPKSAKSDYTKEQKDLVGNICQCKDFYKILNVDKKASPDEI 43
>Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical
protein C10C6.6 protein.
Length = 1178
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 445 CYIVVTGYDVTEGTKPFLHAL*FHVLRQTVSNVL*FC 335
CY++ TG++ ++G L + F V + T +N+ FC
Sbjct: 362 CYVIRTGFNTSQG--KLLRTIMFGVKKATANNLETFC 396
>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical
protein F52B5.3 protein.
Length = 1425
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 308 LLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVI 424
++ P S ELQ +RNSLP + +V + +S+ VI
Sbjct: 163 VIPPKSKCSKELQKVRNSLPASKYCDQVLKSISSCNVVI 201
>AF497825-1|AAM18103.1| 670|Caenorhabditis elegans putative Na-H
exchanger isoform 3 protein.
Length = 670
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +2
Query: 5 FLDACVFRNPREESHHIVKYIIREKVKRKTKIMAVRVQFENNNEVGVFSKLTNTYCLVAI 184
FL+ +SH Y++ + M R F+N + V VFS L + AI
Sbjct: 84 FLNQTTLSGVHLDSHAFFLYLLPPIIFDAGYFMPNRALFKNFDSVLVFSVLGTLWNTFAI 143
Query: 185 GGS 193
GGS
Sbjct: 144 GGS 146
>AF016447-15|AAR30208.1| 651|Caenorhabditis elegans Na/h exchanger
protein 3, isoform b protein.
Length = 651
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +2
Query: 5 FLDACVFRNPREESHHIVKYIIREKVKRKTKIMAVRVQFENNNEVGVFSKLTNTYCLVAI 184
FL+ +SH Y++ + M R F+N + V VFS L + AI
Sbjct: 65 FLNQTTLSGVHLDSHAFFLYLLPPIIFDAGYFMPNRALFKNFDSVLVFSVLGTLWNTFAI 124
Query: 185 GGS 193
GGS
Sbjct: 125 GGS 127
>AF016447-14|AAG24015.2| 670|Caenorhabditis elegans Na/h exchanger
protein 3, isoform a protein.
Length = 670
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +2
Query: 5 FLDACVFRNPREESHHIVKYIIREKVKRKTKIMAVRVQFENNNEVGVFSKLTNTYCLVAI 184
FL+ +SH Y++ + M R F+N + V VFS L + AI
Sbjct: 84 FLNQTTLSGVHLDSHAFFLYLLPPIIFDAGYFMPNRALFKNFDSVLVFSVLGTLWNTFAI 143
Query: 185 GGS 193
GGS
Sbjct: 144 GGS 146
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,349,746
Number of Sequences: 27780
Number of extensions: 402609
Number of successful extensions: 1115
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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