Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16c11r
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    29   0.86 
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    29   0.86 
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    28   1.5  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    28   2.0  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    27   2.6  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    27   3.5  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    26   6.0  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   8.0  
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    26   8.0  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 119  VAVLPSNSVVFKATMTSSLDPGINLNDEK 205
            +A++P  +  F+ T+  +LDP  N  DE+
Sbjct: 1301 LAIIPQENQAFEGTIRENLDPNANATDEE 1329


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = -3

Query: 311 MKQRTKLRVATTLLLQMIISEILKLTRLQNFNLSMASHRSSLYLDL 174
           MK++TK++    LL Q +   + KLT +++  +S+   ++ L L+L
Sbjct: 176 MKEKTKVQGQRDLLEQRLQGLMKKLTEVESLTVSLNDEKNKLTLEL 221


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -2

Query: 783 PTLLTSMYSHKGRGMELSELIVYDGRLLTFDDR-SGMVFEIISNKMVPWLVLTDGNGHVE 607
           P +   +YS + RG + + ++    +   +  + SGMV ++ S   +  LV + G GH+ 
Sbjct: 18  PEIYEGLYSLQHRGQDAAGIVTAGNKGRLYQCKGSGMVADVFSQHQLRQLVGSMGIGHLR 77

Query: 606 KGFKSEWAAMKDEILYIGS 550
                  A  + +  Y+ S
Sbjct: 78  YPTAGSCAHSEAQPFYVNS 96


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 561 YIGSMGKEWTTSSGEFENYDPM 496
           Y    G +W TSSG++ N+ P+
Sbjct: 325 YTAEQGCQWGTSSGDYGNWSPL 346


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 26  NHKNSMPSYFMFSTKVSDSNSKPSVVNAVMYVA-VLPSNSVVFKATMT 166
           N  +   S F+ + K ++    PSV NAV+ ++ V  +NS  F A+ T
Sbjct: 340 NSSDGSTSPFVLAIKEANIRGLPSVFNAVIIISTVSVANSCTFTASRT 387


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 119  VAVLPSNSVVFKATMTSSLDPGINLNDEK 205
            ++++P  S +F+  +  +LDP   L D+K
Sbjct: 1303 LSIIPQESQIFEGNIRENLDPNHRLTDKK 1331


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 774 LTSMYSHKGRGMELSELIVYDGR 706
           L SMY H+   MEL+  +V DG+
Sbjct: 228 LCSMYVHEDADMELASKLVLDGK 250


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/57 (22%), Positives = 28/57 (49%)
 Frame = -3

Query: 353 YGISCRGGVVTNNTMKQRTKLRVATTLLLQMIISEILKLTRLQNFNLSMASHRSSLY 183
           +GI C  G V N     RT++ +A +    + +S ++  + L  + +S  ++   +Y
Sbjct: 321 FGILCIAGFVVNELYTTRTRI-IAPSAFQTLSLSSVMVTSFLHYYIMSTVTYYIPIY 376


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 321 EQYN-ETKDEIKGCNYLITADDNFRNIKANKITKFQPKHGFSSFKFIPGSNDEV 163
           EQ N +  D ++G N   T DD   ++  N + + Q   GF   + I    D++
Sbjct: 401 EQDNTDLNDTVRGLNTSAT-DDRINDLMRNLMKRSQEHEGFEDLEEIDDDYDDI 453


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,707,048
Number of Sequences: 5004
Number of extensions: 81582
Number of successful extensions: 244
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)