Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16c11f
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    29   1.00 
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   4.0  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    27   4.0  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   9.3  

>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +3

Query: 498 YTTTVSCFNDINGNFSAFISLLLVDISAGAPCNSVDPQNETIQ 626
           ++ TVS F D   ++ + +SL+LVDI A       DP NE IQ
Sbjct: 357 HSLTVSKFIDKLESYESQLSLILVDIEA----KFYDPSNEDIQ 395


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 116 KILDIFFYN*NSLSFNTRMQY 54
           K LD+ +YN N+LS+N  ++Y
Sbjct: 429 KALDVTYYNLNTLSWNLYIEY 449


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 107 LKFLKHNMCYI*YYSYKMSLFNEKFNVPSNFNIKYSDSKDTSHYY 241
           LK  + N C +  +S    LF+E FN+     +++S S+    +Y
Sbjct: 106 LKDSEENTCEMILHSSFYLLFHEPFNILKGSTLRFSQSRIHQKWY 150


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 598  QWIHRTRQYNTTYPLTRPVIAGDYITFRIG 687
            Q+  R RQ   +Y L R  IAGDYI   +G
Sbjct: 987  QYEKRFRQSQLSYNLGRLHIAGDYIFSCVG 1016


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,062
Number of Sequences: 5004
Number of extensions: 63857
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)