Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16c07f
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    29   1.1  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    28   1.9  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    27   3.4  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    27   4.4  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   7.8  

>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = -1

Query: 699 NSDVC*VLYRVLALSNNSLINLWTSFCGFLASASNVARW 583
           ++  C +  +V  +   SL+N+WT    F  ++++V ++
Sbjct: 83  STQTCTIAQKVSTMQGKSLLNIWTKSLSFFVTSTDVFKY 121


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
 Frame = +2

Query: 263 SGFPAPAPRAHPALSPTERSPAKAG-------LHVNFSDKGEVKERREKFLTAKYGS 412
           S  P P PR     S   R P K         L  NF DKG V ++R    T K  S
Sbjct: 511 SASPPPVPRLSITRSQVSREPEKPEEIPSVPPLPSNFKDKGHVPQQRSVSYTPKRSS 567


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
 Frame = +2

Query: 272 PAPAPRAHPALSPTERSPAKAGLHVNFSD-KGEVKERREKFLTAK----YGSHQMALIRK 436
           P+   R+ P    + +         N S  +G  K++  K L  K    YG+H  +L + 
Sbjct: 56  PSKPIRSQPLTPSSSKGAGNEPKSQNSSTTRGSAKKQSSKGLEEKLINSYGTHVESLNKG 115

Query: 437 RLAVEMWLYDE 469
           R  +E+W Y E
Sbjct: 116 RRLIEIWKYYE 126


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 382 REVPNGEVWQPSDGTDTQA 438
           R +PN   W+P+DG +T A
Sbjct: 494 RAMPNINCWRPADGNETSA 512


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 272 PAPAPRAHPALSPTERSPAKAGLHVNFSDKGEVKERREKFLTAKYGSHQMAL 427
           P P P  + + +P  RS   + + VN   +GE+ +    F+  +  +   AL
Sbjct: 37  PPPFPSTNASYAPVIRSCDSSEIMVNSLPRGELPDLENDFIEKRLSNANEAL 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,717
Number of Sequences: 5004
Number of extensions: 37846
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)