Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16c07f
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0108 - 25620685-25621115,25621517-25621602,25621963-25622507     32   0.66 
11_01_0680 - 5554012-5554028,5555525-5555678,5555790-5555951,555...    29   6.2  
04_03_0802 - 19830614-19831275,19831426-19831507                       29   6.2  
06_03_1121 + 27767707-27768065,27768612-27769034,27770013-277701...    28   8.2  

>05_06_0108 - 25620685-25621115,25621517-25621602,25621963-25622507
          Length = 353

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 266 GFPAPAPRAHPALSPTERSPAKAGLHVNFSDKGEVKERREKFLT 397
           G PAP P A  A SP   +P   G+    +  GEV   RE+++T
Sbjct: 138 GTPAPPPPAAEAQSPVTPAPVSTGMEQEMNGGGEVD--REEWIT 179


>11_01_0680 -
           5554012-5554028,5555525-5555678,5555790-5555951,
           5556130-5557148,5559808-5559835,5560996-5561079,
           5561442-5561654,5562267-5562569
          Length = 659

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 167 RHTPRLQHSTQHYNGYVDDHTLDTRGSFRGTQRPNASAMRLK 42
           RH+P L+  T        +H L+ +GS+  T+R +A    LK
Sbjct: 588 RHSPVLEKLTLELFCQESEHILEMKGSYNQTERSSAIPEHLK 629


>04_03_0802 - 19830614-19831275,19831426-19831507
          Length = 247

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 257 PLRTPCRTQPHRRRCLA*SG--GRSVPP 180
           P   PC+  PHRRR  A SG   R+VPP
Sbjct: 139 PYPVPCKCCPHRRRRHARSGPARRAVPP 166


>06_03_1121 +
           27767707-27768065,27768612-27769034,27770013-27770175,
           27770271-27770381,27770895-27770963,27771117-27771203,
           27771967-27772752
          Length = 665

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +1

Query: 364 RGKRATREVPNGEVWQPSDGTDTQATRGRDVALRRAAEALRDTEGEQ 504
           RG +  +  P GE     + T  Q +RG D      AE  R   G++
Sbjct: 594 RGTKREQRRPGGERGDRYETTSDQGSRGHDATGNSGAEGARSQSGDR 640


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,733,476
Number of Sequences: 37544
Number of extensions: 337064
Number of successful extensions: 1280
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)