Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16c07f
         (849 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74036-4|CAE17849.1|  112|Caenorhabditis elegans Hypothetical pr...    56   3e-08
Z77662-14|CAI79239.1|  245|Caenorhabditis elegans Hypothetical p...    28   9.6  
AL033514-12|CAA22099.1|  208|Caenorhabditis elegans Hypothetical...    28   9.6  

>Z74036-4|CAE17849.1|  112|Caenorhabditis elegans Hypothetical
           protein F55C10.5 protein.
          Length = 112

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 25/48 (52%), Positives = 30/48 (62%)
 Frame = +2

Query: 341 HVNFSDKGEVKERREKFLTAKYGSHQMALIRKRLAVEMWLYDELQKLY 484
           H  F D     E R + LT KYG HQMALIRKR+ VE W+  E+ KL+
Sbjct: 7   HARFGDSKSRMEDRSRVLTMKYGKHQMALIRKRMKVENWIETEVTKLF 54


>Z77662-14|CAI79239.1|  245|Caenorhabditis elegans Hypothetical
           protein F47B8.13 protein.
          Length = 245

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +2

Query: 272 PAPAPRAHPALSPT-ERSPAKAG 337
           PAPAP A PAL+P+ + +PA  G
Sbjct: 121 PAPAPVAEPALAPSPDAAPAADG 143


>AL033514-12|CAA22099.1|  208|Caenorhabditis elegans Hypothetical
           protein Y75B8A.11 protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 163 TLRGCSTQHNT--TTVMSMITHLTLAEAFAVHNVRMRRRC 50
           T+  C+++ N   T+  S I H  L  A  +  +R RRRC
Sbjct: 118 TVPACTSKKNVLLTSTTSTINHQKLEPATTLSPIRQRRRC 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,319,501
Number of Sequences: 27780
Number of extensions: 242393
Number of successful extensions: 759
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)