Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16c07f
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   8.2  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 89  SFRGTQRPNASAMRLKLPSRPPRQEH 12
           SFR T+RP   A+ L   S  P  EH
Sbjct: 119 SFRCTERPEDGALILHYYSDRPGLEH 144


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 89  SFRGTQRPNASAMRLKLPSRPPRQEH 12
           SFR T+RP   A+ L   S  P  EH
Sbjct: 119 SFRCTERPEDGALILHYYSDRPGLEH 144


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 605  DAKKPQKDVHKFINELLDKAKTL*RT 682
            +A K + DV   +NE LDKA  +  T
Sbjct: 1376 NAGKKKIDVRAKLNEYLDKADVIVNT 1401


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 406 WQPSDGTDTQATRG 447
           WQP D   T+AT G
Sbjct: 199 WQPEDEECTEATAG 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,970
Number of Sequences: 438
Number of extensions: 2979
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)