Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16c05f
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 36 0.009
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 29 1.0
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 28 1.3
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 28 1.8
SPBC216.06c |swi1||replication fork protection complex subunit S... 27 2.3
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 3.1
SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr 2|||... 27 3.1
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 27 3.1
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 27 3.1
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 27 4.1
SPAC24C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.1
SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch... 26 5.4
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 26 5.4
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 26 5.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.4
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 7.2
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 26 7.2
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 26 7.2
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 7.2
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 7.2
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos... 26 7.2
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 35.5 bits (78), Expect = 0.009
Identities = 24/84 (28%), Positives = 41/84 (48%)
Frame = +3
Query: 411 KKEDMSSEYQYYPYEALKRDGSLIGQIEYTSAEHINDGQYPILNDILNEYLQKLERQETN 590
K+E ++ ++ Y+ +KR+ S++ QIE+ S EH + + +L Q E
Sbjct: 330 KEESLTLANKFSDYDEIKRELSVLKQIEF-SGEHATHENTSLESQLLKREKQLSEELAKL 388
Query: 591 SDTNETEEQRITNEVEKRAANMHQ 662
TN RIT E K+A+ + Q
Sbjct: 389 RSTNAQLTDRITQE-SKKASFLEQ 411
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +3
Query: 258 KKHEDDSSEQYYKRKPQFFVGVKGKKNFYDYLENPDGY 371
KK DD S +RKP FF K Y YL+NPD +
Sbjct: 159 KKSLDDPSP---RRKPSFF-SKSNLKRKYRYLKNPDAW 192
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 516 NDGQYPILNDILNEYLQKLERQETNS 593
N G+ P+L I NE L++L RQE +S
Sbjct: 138 NRGRGPVLLRISNELLRRLSRQENSS 163
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
Frame = +3
Query: 480 IGQIEYTSAEHINDGQYPILND--ILNEY---LQKLERQETNSDT-NETEEQR 620
I Q +Y E +++GQ +LND +L + L+KL + T+S+ N++E+Q+
Sbjct: 119 IAQGQYLFPESVDNGQKHVLNDSGLLRWWVNCLEKLRKYYTDSEAPNDSEKQK 171
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -1
Query: 689 RFLPSHAVKLVHVRSAFLHFVR 624
R LP H ++L++V+S FL F+R
Sbjct: 362 RVLPIHKMQLLYVQSFFLEFMR 383
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +2
Query: 566 EARASRNEQRYQRDRRTTDHERSGETRCEHAPVLRRAREEICRQQKTIRLEHPRE 730
EAR R EQR +R++ E + R E R ++ +QQ+ R + RE
Sbjct: 636 EARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMARE 690
>SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 197
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 408 GKKEDMSSEYQYYPYEALKRDGSLIGQIEYTSAEHINDGQYPILNDILNEYLQKLERQET 587
G+++D+ E Y + R L G I + E+ Y +LN IL+E+L K R +
Sbjct: 54 GQRQDV--EQSNYVFHVYNRSDGLCGVIA-SDKEYPLRVAYTLLNKILDEFLTKNPRTKW 110
Query: 588 NS 593
S
Sbjct: 111 ES 112
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 3.1
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +3
Query: 411 KKEDMSSEYQYYPYEALKRDGSLIGQIEYTSAEHINDGQYPI-LNDILNEYLQKLERQET 587
K+ED SS Y+ +++ S+ E TS ++ Q P+ LN+ EY+ ++
Sbjct: 114 KEEDESSSYKN-EFKS-SSSASVSSNFEKTSGSDDHNSQSPVPLNEGF-EYIASSGSEDK 170
Query: 588 NSDTNETEEQRITNEVEKRAANMHQFY 668
NSD E + + ++K + Q+Y
Sbjct: 171 NSDEEFAVEMILDSRMKKDGSGF-QYY 196
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 736 MNFPRMLKSYGLLLSTDFFPRTP*NWC 656
M P ++KSY L + + FP WC
Sbjct: 508 MEHPNVVKSYDLCIDSHIFPLYSDTWC 534
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 4.1
Identities = 7/26 (26%), Positives = 19/26 (73%)
Frame = +3
Query: 420 DMSSEYQYYPYEALKRDGSLIGQIEY 497
++ S+ +++P++ + +DG + Q+EY
Sbjct: 80 EVQSDMKHWPFKVISKDGKPVLQVEY 105
>SPAC24C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 26.6 bits (56), Expect = 4.1
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 489 IEYTSAEHINDGQYPILNDILNEYLQKLERQETNSDTNETE--EQRITNEVEKRAANMHQ 662
I+ TSAE ++ + IL L E+L E +ET + + E Q I EK + +
Sbjct: 7 IKDTSAELLSQQDFSILQSRLLEFLASQEARETVTASKELTLLRQGIRQLKEKVSKMEPE 66
Query: 663 FYGVRGKKSV 692
V+ KKS+
Sbjct: 67 EMTVKEKKSI 76
>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 333
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 273 DSSEQYYKRKPQFFVGVKGKKNFYDYLE--NPDGYFKRAPLGFTGVRGKKE 419
D E+Y K + F+ VKG +F +P+ K T +RGKK+
Sbjct: 66 DYFEKYPKNADKVFLSVKGGTDFKTLAPHGDPESVTKSVKNALTRLRGKKK 116
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 26.2 bits (55), Expect = 5.4
Identities = 8/33 (24%), Positives = 22/33 (66%)
Frame = +3
Query: 399 GVRGKKEDMSSEYQYYPYEALKRDGSLIGQIEY 497
G R ++ S+ +++P++ +++DG + Q+E+
Sbjct: 73 GRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEF 105
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 26.2 bits (55), Expect = 5.4
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +3
Query: 525 QYPILNDILNEYLQKLERQETNSDTN-----ETEEQRITNEVEKRAANMHQFYGVRGKKS 689
Q I+ D+L +K RQ S ++ E+ E R TN + + F G K S
Sbjct: 621 QNVIMPDVLAFEREKKRRQTHRSVSSGEVSRESSESRNTNAKASKRVYI-TFTGYDKKPS 679
Query: 690 VDNKRPYDLSI 722
+DN + D+SI
Sbjct: 680 IDNLKKLDMSI 690
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 5.4
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +2
Query: 548 LERVFTEARASRNEQRYQRDRRTTDHERSGETRCEH-APVLRRAREEICRQQKT-IRLEH 721
L+ V T +A RN + R+ D R + RCEH + L++ ++ Q +T R E
Sbjct: 1672 LQDVLTSVQA-RNAELEDEVSRSVDKIRRRDDRCEHLSGKLKKLHSQLEEQHETFFRAEQ 1730
Query: 722 PR 727
R
Sbjct: 1731 QR 1732
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 510 APRRYIRFGLSKTHRASMLRMDSTGI 433
APRR + L RASM++ D TG+
Sbjct: 1093 APRRAKGYRLESLLRASMIKNDKTGL 1118
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 25.8 bits (54), Expect = 7.2
Identities = 24/88 (27%), Positives = 37/88 (42%)
Frame = +3
Query: 354 ENPDGYFKRAPLGFTGVRGKKEDMSSEYQYYPYEALKRDGSLIGQIEYTSAEHINDGQYP 533
E+P +F+ GF G E S + YEA D S + E S E+ D
Sbjct: 918 EDPIAFFEEGGWGFLGAPSDDEGDDSVEEVSEYEASDADPS--DEEEEESEEYSEDASE- 974
Query: 534 ILNDILNEYLQKLERQETNSDTNETEEQ 617
D +E ++E +E+ D +E E +
Sbjct: 975 --EDGYSE--SEVEDEESGEDWDELERK 998
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 419 GHVFRIPVLSIRSIEARWVFDRPNRIYLRGAHQRRPIPDSQ 541
G+ F P S+R+ ++ W F + + R H + I +Q
Sbjct: 3 GNWFEGPPCSVRNCKSTWYFKNAGQTFCRRGHAQHGIEIAQ 43
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +3
Query: 279 SEQYYKRKPQFFVGVKGKKNFYDYLENPDGYFKRAPLGFTGVR--GKKEDMSSEYQYYPY 452
+ Q Y+RKP+ +KNFY ++N YF A G + G + Y + Y
Sbjct: 107 NSQGYRRKPKRDDYNNNRKNFYPPIQN-STYFINATGGIDSMPYFGLNNAPGNIYPFSMY 165
Query: 453 EALKRD 470
+ L+ D
Sbjct: 166 KPLEAD 171
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 607 QKNNGSRTKWRNALRTCTSFTACEGRNLSTTKDH 708
+KNN R KWR L T GRN T+ +
Sbjct: 2478 EKNNADRPKWRFHLLRQLQHTKGLGRNRVATRQN 2511
>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +3
Query: 453 EALKRDGSLIGQIEYTSAEHINDGQYPILNDILNEYLQKLERQETNSDTNETEEQRITNE 632
EAL R + + Y A+ + +YPI + I L KL R+ +S E E+ + N+
Sbjct: 81 EALARVRAKPETVLYKVADPNENNKYPICSIISYTELSKL-RENQSSRLREAEKSKHKNK 139
Query: 633 VEKR 644
R
Sbjct: 140 TRTR 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,150,932
Number of Sequences: 5004
Number of extensions: 66437
Number of successful extensions: 226
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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