Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16c05f
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260... 33 0.35
01_05_0593 + 23494515-23494706,23495819-23495936,23496302-234963... 30 1.9
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 30 2.5
09_04_0435 - 17545879-17546605,17546721-17546782,17547123-175473... 30 2.5
12_02_0457 + 19239816-19241319,19241337-19241632,19241729-192418... 29 5.7
04_04_0838 - 28550036-28550237,28550595-28550676,28550972-285510... 29 5.7
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562... 29 5.7
02_02_0475 - 10746593-10748104 29 5.7
01_07_0369 - 43111835-43111882,43112172-43112245,43112670-431127... 29 5.7
11_06_0414 - 23247896-23248654,23249400-23249879,23251924-232520... 28 7.5
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 28 7.5
12_02_0693 - 22207582-22207620,22208421-22208597,22209258-222093... 28 9.9
10_02_0126 - 5543658-5543670,5543748-5543840,5544344-5544529,554... 28 9.9
>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
2602637-2602810,2603032-2603098,2603735-2603757,
2603899-2604001,2604087-2604848,2605098-2605292,
2605496-2606115,2606429-2606480,2606558-2607197,
2608366-2608574,2608660-2609189,2609500-2609566,
2609651-2609728,2610415-2610483,2610569-2610643
Length = 2021
Score = 32.7 bits (71), Expect = 0.35
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -1
Query: 524 AVVDVLRGGIFDLAYQRPIALQCFVWIVLVFGRHVLFFASDTCEA 390
AV+ ++R +F Y P+++ VLV G H+L+ A D CE+
Sbjct: 989 AVLQIVRAVLFYAVYSDPLSVSRAPDNVLVTGLHLLWLALDICES 1033
>01_05_0593 +
23494515-23494706,23495819-23495936,23496302-23496384,
23496468-23496524,23497004-23497112,23497230-23497282,
23497644-23497724,23497815-23497931
Length = 269
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 563 TEARASRNEQRYQRDRRTTDHERSGETRCEHAPVLRRAREEICRQQKTIRLEH---PRE 730
TEA A+ + Y + R T E+SG A + R R + R+Q+ R H PRE
Sbjct: 19 TEAGAAARSEGYNKRRPETTTEKSGRRGTAGAELQSRPRIHLLRRQQVGRSTHSLNPRE 77
>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 414 KEDMSSEYQYYPYEALKRDGSLIGQIEYTSAEHINDGQYPILNDILN 554
K M+SEY + L +G ++ QI Y + YP L+D +N
Sbjct: 1894 KSPMNSEYNTVSTQLLDTEGCVLEQINYNNKLTKRVENYPALSDSMN 1940
>09_04_0435 - 17545879-17546605,17546721-17546782,17547123-17547335,
17547506-17547590,17547904-17548061,17548174-17548294,
17548765-17548927,17548973-17549097,17550800-17550888,
17550970-17551636,17552671-17552717,17553506-17553862
Length = 937
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/96 (21%), Positives = 37/96 (38%)
Frame = +3
Query: 492 EYTSAEHINDGQYPILNDILNEYLQKLERQETNSDTNETEEQRITNEVEKRAANMHQFYG 671
EY +D YP+ ++ E + ++ +S T Q + E + HQ
Sbjct: 805 EYDYIFGSSDQMYPVSTVVIPEEHELSYSRQRSSLNPSTSSQYVDQAAEVEMLHQHQHQA 864
Query: 672 VRGKKSVDNKRPYDLSIRGKFIGVRGKKDVKNSNGK 779
RG + P+ S +GK ++ +SN K
Sbjct: 865 GRGGWDEGDVMPFFYSNQGKHHDSSRSSNISSSNRK 900
>12_02_0457 +
19239816-19241319,19241337-19241632,19241729-19241829,
19241939-19242029,19242158-19242268,19242360-19242425,
19242457-19242462
Length = 724
Score = 28.7 bits (61), Expect = 5.7
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 3/115 (2%)
Frame = +2
Query: 398 RCQRQKRGHVFRIPVLSIRSIEARWVFDRPNRIYL---RGAHQRRPIPDSQ*YLERVFTE 568
RC+R+ R R P + + + V P+R+ L R +RR + + E E
Sbjct: 169 RCRRRGRP---RAPAAAAAAAGTKKVGSGPSRVTLERLREGIERRAEEEERRAEEERRAE 225
Query: 569 ARASRNEQRYQRDRRTTDHERSGETRCEHAPVLRRAREEICRQQKTIRLEHPREI 733
A + E+R +R+ E R RR +EE R++ R E R +
Sbjct: 226 AERAAAEERARREEEEGRARAEEERRRREEERRRRRKEEKVREEARRREEQRRRL 280
>04_04_0838 - 28550036-28550237,28550595-28550676,28550972-28551011,
28551342-28551416,28551448-28551543,28551710-28551805,
28551897-28551974,28552064-28552170,28552450-28552477,
28552777-28552898,28554106-28554172,28554336-28554508,
28554763-28554846,28555616-28555733,28556093-28556164,
28557026-28557118,28557484-28557636,28558000-28558086,
28559436-28559528,28560416-28560643,28561106-28561207,
28561390-28561596,28561798-28561846,28562385-28562537,
28562649-28562712,28562905-28563175,28564008-28564072,
28564184-28564337
Length = 1052
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/76 (23%), Positives = 34/76 (44%)
Frame = -1
Query: 629 VRDPLFFCLVGIAVRFLTLELL*ILVQDIIENRVLAVVDVLRGGIFDLAYQRPIALQCFV 450
+RD L F L +V +E+ + +++ +VD LR + +Q ++ +
Sbjct: 803 MRDSLLFSLYRASVESARMEMFIPTIDQVLDQVCDLIVDALRDQVVLRVFQ--ACMEGLI 860
Query: 449 WIVLVFGRHVLFFASD 402
WI+L G F +D
Sbjct: 861 WILLDGGPSRAFLETD 876
>04_03_0659 -
18453778-18453903,18453976-18454963,18455496-18456229,
18456292-18456360,18456528-18456605,18456703-18456789,
18456881-18456931,18457021-18457092,18457177-18457304,
18458194-18458275,18458705-18458754,18459043-18459096,
18459586-18459675,18459903-18459983,18460443-18460538,
18460960-18461022,18461313-18461402,18461630-18461698,
18462051-18462291
Length = 1082
Score = 28.7 bits (61), Expect = 5.7
Identities = 24/81 (29%), Positives = 41/81 (50%)
Frame = +3
Query: 555 EYLQKLERQETNSDTNETEEQRITNEVEKRAANMHQFYGVRGKKSVDNKRPYDLSIRGKF 734
EY K+ RQE +D++ E+ T+ +++ AN V+ K + +K D G+
Sbjct: 201 EYTTKVNRQERITDSSSIEQVIGTSSIQEMEANEK----VKSKDT--SKGNKDNGQSGRT 254
Query: 735 IGVRGKKDVKNSNGKEXKFLL 797
I + KKDV N K+ + +L
Sbjct: 255 ISLDTKKDV-NLKYKDDRLIL 274
>02_02_0475 - 10746593-10748104
Length = 503
Score = 28.7 bits (61), Expect = 5.7
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Frame = +2
Query: 194 LHRDGSGN-DKTYPPGFLGNAREETRRRQLRAVLQAKAPVLRRSQGQEELLRLPGKP*RI 370
L R G G+ D+ Y F+ RQ+R+V V +RS+G+ E++ PG +
Sbjct: 61 LDRHGRGDEDEAY---FVAPMGAGDGARQVRSVAGGGKWVKQRSEGKGEVVVAPGGEAFL 117
Query: 371 LQKGSARLHRCQRQ--KRGHVFRIPVLSIRSIEARWVFDRPNRIYLRGAHQ-RRPIPD 535
+ S HR R+ G V ++S + A R I G Q R+ +PD
Sbjct: 118 WENFSLNFHRDDRRSGSTGWVMHEYIVSPPAGSAVAASHRATHIAFTGHGQNRKRVPD 175
>01_07_0369 -
43111835-43111882,43112172-43112245,43112670-43112754,
43112930-43113022,43113099-43113163,43114051-43114142,
43114240-43114527,43114642-43114706,43115421-43115502,
43115578-43115669,43116169-43116301,43116380-43116501,
43116624-43116725,43116853-43116892,43117032-43117103,
43117241-43117320,43117444-43117818
Length = 635
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 252 RGKKH--EDDSSEQYYKRKPQFFVGVKGKKNFY 344
R KKH EDD+S + KRK FF+ K Y
Sbjct: 118 RDKKHLHEDDTSASWRKRKKHFFILSNSGKPIY 150
>11_06_0414 -
23247896-23248654,23249400-23249879,23251924-23252091,
23252223-23252231
Length = 471
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 548 LERVFTEARASRNEQRYQRDRRTTDHERSGETRCEHAPVLRRAREEICRQQKTI 709
LER + + R+ + ++R ET+CE L R EE+ RQ++ +
Sbjct: 72 LERKEKQLKEERHGEEHERPHEELGQGTKLETQCEEHKRLERQCEELERQRRKL 125
>11_04_0236 +
15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +3
Query: 495 YTSAEHINDGQYPILNDILNEYLQKLERQETNSDTNETEEQRITNEVEKRAANMHQFYGV 674
+ + IN + DIL YL K ++ TNS T +E+++ NE+++ N F +
Sbjct: 220 FVTVSRINPNMNRVFRDILY-YLDK--KKFTNSYTLMLDEKQLINELQEFLQNKRYFIVI 276
Query: 675 RG 680
G
Sbjct: 277 DG 278
>12_02_0693 -
22207582-22207620,22208421-22208597,22209258-22209347,
22210215-22210280,22210473-22210570,22210669-22210789,
22210875-22212477,22213332-22213915
Length = 925
Score = 27.9 bits (59), Expect = 9.9
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +2
Query: 566 EARASRNEQRYQRDR---RTTDHE-RSGETRCEHAPVLRRAREEICRQQKTIRLEHPREI 733
+A+ EQ+ Q D T DHE R + R E +R+ REE R+Q+ RLE RE+
Sbjct: 497 DAKHRNREQQEQDDEARFNTQDHEERDRQERLEREREMRQ-REEKEREQR--RLEEEREL 553
>10_02_0126 -
5543658-5543670,5543748-5543840,5544344-5544529,
5544613-5545310,5545323-5546237,5546842-5547081
Length = 714
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 203 DGSGNDKTYPPGFLGNAREETRRRQLRAVLQAK 301
DG +DK Y P GN+ EE +R Q A L K
Sbjct: 66 DGEEDDKDYIPPKEGNSPEEIQRSQKYAELAKK 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,595,661
Number of Sequences: 37544
Number of extensions: 434405
Number of successful extensions: 1381
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -