Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16c03f
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    28   1.5  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   7.9  

>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 458 DSEENQVEEPAQPSDEVAENDEGSGEEWQED 550
           + E  + +EP +P  E AE  +  GEE +E+
Sbjct: 110 EKEGKEAKEPEEPPKEEAEEPQEGGEEEEEE 140


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 114 ENAEAPTSAAAQHRSHKALFMLTATKNASDAIYS 13
           ENA  P + +A  R H A+    A  + S A++S
Sbjct: 337 ENASQPVAPSASQREHSAVNSPAAAMSPSTAMFS 370


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 309 AQRSGRSDQSQTCSASLNHVSSGHRIRYERP 217
           +Q  GRS+ SQ  + SL  + +  R+ ++RP
Sbjct: 130 SQVEGRSELSQVENDSLESIGNYDRVEFKRP 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,483
Number of Sequences: 5004
Number of extensions: 29163
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)