Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16c01f
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    83   5e-17
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    80   4e-16
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    67   2e-12
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    38   0.002
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    35   0.012
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    33   0.065
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    31   0.20 
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    28   1.8  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    28   1.8  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   2.4  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    27   3.2  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   4.3  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    27   4.3  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    27   4.3  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   7.5  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   9.9  

>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 83.0 bits (196), Expect = 5e-17
 Identities = 40/87 (45%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
 Frame = +2

Query: 2   YAPWCGHCQKLAPVWEELGEKLKDE-EVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDS 178
           YAPWCGHC+ LAP +E+L E+  D+  V + KIDAT ND   S   +SGFPTI +   + 
Sbjct: 381 YAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDISVS---ISGFPTIMFFKAND 437

Query: 179 SKKPQRYNGGRALEDFIKYVSEQATSE 259
              P RY G R LED   ++ + A+ E
Sbjct: 438 KVNPVRYEGDRTLEDLSAFIDKHASFE 464



 Score = 66.1 bits (154), Expect = 6e-12
 Identities = 27/88 (30%), Positives = 52/88 (59%)
 Frame = +2

Query: 2   YAPWCGHCQKLAPVWEELGEKLKDEEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSS 181
           YAPWCGHC+ LAP +E   ++L+ + + ++++D T      S++ + G+PT+      + 
Sbjct: 47  YAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTL--NVFKNG 104

Query: 182 KKPQRYNGGRALEDFIKYVSEQATSELK 265
           K+  +Y+G R  +  +KY+ +Q    +K
Sbjct: 105 KQISQYSGPRKHDALVKYMRKQLLPTVK 132


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 79.8 bits (188), Expect = 4e-16
 Identities = 36/87 (41%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
 Frame = +2

Query: 2   YAPWCGHCQKLAPVWEELGEKLKDE-EVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDS 178
           YA WCG+C++LAP +E LG+  K+E  V+I+KI+A          +V+ FPTI + PKD 
Sbjct: 166 YADWCGYCKRLAPTYETLGKVFKNEPNVEIVKINADVFADIGRLHEVASFPTIKFFPKDD 225

Query: 179 SKKPQRYNGGRALEDFIKYVSEQATSE 259
             KP+ Y G R+LE  I+Y+++++ ++
Sbjct: 226 KDKPELYEGDRSLESLIEYINKKSGTQ 252



 Score = 79.0 bits (186), Expect = 8e-16
 Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
 Frame = +2

Query: 2   YAPWCGHCQKLAPVWEELGEKLKD-EEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDS 178
           YA WCGHC+ LAPV+EELG   +D  +V I KIDA  +     ++ ++GFPT+ W P D 
Sbjct: 47  YATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDG 106

Query: 179 SKKPQRYNGGRALEDFIKYVSEQ 247
           S +P +Y+  R ++   ++VSE+
Sbjct: 107 S-EPVQYSNARDVDSLTQFVSEK 128


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 36/92 (39%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
 Frame = +2

Query: 2   YAPWCGHCQKLAPVWEELGEKLKD-EEVDIIKIDATANDWPKSQFDVSGFPTI---FWKP 169
           YAPWCG+C+KL P +++L   L     V  +  DA  N    SQ+ V GFPTI   +   
Sbjct: 56  YAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNRAVCSQYQVQGFPTIKLVYPSS 115

Query: 170 KDSSKKPQRYNGGRALEDFIKYVSEQATSELK 265
           K SS     YNG R+ +   K+VS+   S++K
Sbjct: 116 KGSSLSSTDYNGDRSYKSLQKFVSDSIPSKVK 147


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = +2

Query: 2   YAPWCGHCQKLAPVWEELGEKLKDEEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSS 181
           YA WCG C+ ++P++ +L  K    +    K++        S   V   PT  +   ++ 
Sbjct: 27  YADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVF--FENG 84

Query: 182 KKPQRYNGG--RALEDFIKYVSEQAT 253
           K+     G   +AL++ +  +S +AT
Sbjct: 85  KQIDMLTGANPQALKEKVALISSKAT 110


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 35.1 bits (77), Expect = 0.012
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 2   YAPWCGHCQKLAPVWEELGEKLKDE 76
           Y P CG C++L P+W+ + EK K++
Sbjct: 50  YLPSCGACKRLGPMWDNMVEKAKEQ 74


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 32.7 bits (71), Expect = 0.065
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 2   YAPWCGHCQKLAPVWEELGEKLKDEEVDIIKIDATANDWPKSQFDVSGFPTIF 160
           +A WCG C+ +AP +E+      D     IK+D        ++  V   P+ F
Sbjct: 26  FATWCGPCKAIAPKFEQFSNTYSD--ATFIKVDVDQLSEIAAEAGVHAMPSFF 76


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 2   YAPWCGHCQKLAPVWEELGEKLKDEEVDIIKIDA 103
           YA WCG C+ L P  E+L E  ++++   I ++A
Sbjct: 43  YADWCGPCKYLKPFLEKLSE--QNQKASFIAVNA 74


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +2

Query: 17  GHCQKLAPVWEELGEKLKDEEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQR 196
           G  + L+P W+++ +  KD    ++ +D      P+ ++D+  F    W  K  SK P+ 
Sbjct: 308 GEFEFLSPWWDDISDSAKDLITHLLTVD------PRERYDIHQFFQHPW-IKGESKMPEN 360

Query: 197 Y 199
           +
Sbjct: 361 F 361


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 486 ERQCLCTQRM-LFISAFPWTDITHINSEVIFHCFSHYIHP 370
           E + +C   + +F   FP   +  +N +V+ HC SH   P
Sbjct: 594 EHRAMCAFILSVFCRGFPQGQLACLNPQVLSHCLSHLNSP 633


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 532 SVNMMVNECNITIARGTTMSLYPKNAFHICFPLDRYNTH 416
           +V +  N  N++    TT+S+   +   IC P+D+ NTH
Sbjct: 543 TVKLEDNTVNLSFVNETTVSV---DKVVICIPMDKLNTH 578


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 5   APWCGHCQKLAPVWEELGEKLKDEEVDII 91
           APW    +++A V EE   ++K  E+DI+
Sbjct: 453 APWLRKTEQIAVVHEEHPAQIKKSEIDIL 481


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 450 ISAFPWTDITHINSEV-IFHCFSHYIHPSHKYT-RRSFMESF 331
           IS   +TD   INS +  F CF H + PS K T   +F+E F
Sbjct: 780 ISRCSFTDF-EINSILNFFFCFLHTVEPSGKLTFELAFLEIF 820


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 489 LAIVMLHSLTIIFTDNRSRITLLDLQNNTDA*TQFHLSLLSVYGA 623
           LA++ LH L I++ D +    LLD + +    T F LS ++  GA
Sbjct: 201 LALIHLHKLGIVYRDLKPENCLLDAEGHI-LLTDFGLSKVAENGA 244


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -2

Query: 754 QLM*LIYHPQVE---VYQYTTYDNTSDFYKNV 668
           Q+M ++ HP +     Y YTT DN+ + Y N+
Sbjct: 75  QIMRIMKHPNIVDLIAYYYTTGDNSDEVYLNL 106


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 161 WKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELKGWDRKG 283
           W+  D  + P++YN    LE + KY    AT+ L+G    G
Sbjct: 112 WQ-SDHKRLPEKYNQMVCLEAYRKYPPVCATAGLRGIQNLG 151


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 134 DVSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELK 265
           +VS FP I  + + SSK P++ +    LE  IK+VS    + ++
Sbjct: 465 NVSDFPQIVEQEELSSKNPRKVHFSDTLE--IKHVSRSGKANIE 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,505,954
Number of Sequences: 5004
Number of extensions: 77176
Number of successful extensions: 258
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)