Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16b23f
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   3.6  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    27   3.6  
SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces...    26   6.2  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 440 APQQHAELQRVHQVLHQEQSAQ 375
           APQQH +LQR+  +L   Q  Q
Sbjct: 129 APQQHPQLQRMMPILSSNQPIQ 150


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +2

Query: 386 VPGGGPGGLAEVRRAA 433
           V GGG GGLA  RRAA
Sbjct: 12  VIGGGSGGLASARRAA 27


>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 51

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +1

Query: 7   PWHARGRRRDSLPK--QTCRPVDQWSR*STGGTRH 105
           P H   R +  L K  +  RP+ QW R  TG T H
Sbjct: 2   PSHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVH 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,639,933
Number of Sequences: 5004
Number of extensions: 19201
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)