Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16b23f
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78066-8|CAE48546.1|  204|Caenorhabditis elegans Hypothetical pr...    87   2e-17
Z78066-7|CAE48544.1|  570|Caenorhabditis elegans Hypothetical pr...    87   2e-17
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr...    87   2e-17
Z78066-5|CAB01523.1|  222|Caenorhabditis elegans Hypothetical pr...    87   2e-17
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr...    87   2e-17
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr...    84   8e-17
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    31   0.63 
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    31   0.63 
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.    31   0.63 
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    31   0.63 
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    31   0.63 
Z83230-6|CAB05746.1|  336|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AL132864-5|CAH60767.2|  281|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z78066-8|CAE48546.1|  204|Caenorhabditis elegans Hypothetical
           protein W06A7.3e protein.
          Length = 204

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 41/137 (29%), Positives = 73/137 (53%)
 Frame = +3

Query: 219 FRLYKNVLQAVQKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXXYELRRLFLVE 398
           FR++K V   ++KT+  HPF  +L  ++++                     +L++L  VE
Sbjct: 58  FRVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIANKLKKLVFVE 117

Query: 399 DLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKI 578
             ++S+KFG++LW LTY+ + F+G TL ILG + +F++PK YE N+  +D +L      +
Sbjct: 118 SPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHL 177

Query: 579 NEITAKVRAAVPLGRRA 629
             +   +   +P  R A
Sbjct: 178 KNVQNIIDEKLPFLRSA 194


>Z78066-7|CAE48544.1|  570|Caenorhabditis elegans Hypothetical
           protein W06A7.3d protein.
          Length = 570

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 41/137 (29%), Positives = 73/137 (53%)
 Frame = +3

Query: 219 FRLYKNVLQAVQKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXXYELRRLFLVE 398
           FR++K V   ++KT+  HPF  +L  ++++                     +L++L  VE
Sbjct: 424 FRVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIANKLKKLVFVE 483

Query: 399 DLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKI 578
             ++S+KFG++LW LTY+ + F+G TL ILG + +F++PK YE N+  +D +L      +
Sbjct: 484 SPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHL 543

Query: 579 NEITAKVRAAVPLGRRA 629
             +   +   +P  R A
Sbjct: 544 KNVQNIIDEKLPFLRSA 560


>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
            W06A7.3c protein.
          Length = 2484

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 41/137 (29%), Positives = 73/137 (53%)
 Frame = +3

Query: 219  FRLYKNVLQAVQKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXXYELRRLFLVE 398
            FR++K V   ++KT+  HPF  +L  ++++                     +L++L  VE
Sbjct: 2338 FRVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIANKLKKLVFVE 2397

Query: 399  DLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKI 578
              ++S+KFG++LW LTY+ + F+G TL ILG + +F++PK YE N+  +D +L      +
Sbjct: 2398 SPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHL 2457

Query: 579  NEITAKVRAAVPLGRRA 629
              +   +   +P  R A
Sbjct: 2458 KNVQNIIDEKLPFLRSA 2474


>Z78066-5|CAB01523.1|  222|Caenorhabditis elegans Hypothetical
           protein W06A7.3b protein.
          Length = 222

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 41/137 (29%), Positives = 73/137 (53%)
 Frame = +3

Query: 219 FRLYKNVLQAVQKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXXYELRRLFLVE 398
           FR++K V   ++KT+  HPF  +L  ++++                     +L++L  VE
Sbjct: 76  FRVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIANKLKKLVFVE 135

Query: 399 DLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKI 578
             ++S+KFG++LW LTY+ + F+G TL ILG + +F++PK YE N+  +D +L      +
Sbjct: 136 SPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHL 195

Query: 579 NEITAKVRAAVPLGRRA 629
             +   +   +P  R A
Sbjct: 196 KNVQNIIDEKLPFLRSA 212


>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
            W06A7.3a protein.
          Length = 2607

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 41/137 (29%), Positives = 73/137 (53%)
 Frame = +3

Query: 219  FRLYKNVLQAVQKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXXYELRRLFLVE 398
            FR++K V   ++KT+  HPF  +L  ++++                     +L++L  VE
Sbjct: 2461 FRVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIANKLKKLVFVE 2520

Query: 399  DLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKI 578
              ++S+KFG++LW LTY+ + F+G TL ILG + +F++PK YE N+  +D +L      +
Sbjct: 2521 SPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHL 2580

Query: 579  NEITAKVRAAVPLGRRA 629
              +   +   +P  R A
Sbjct: 2581 KNVQNIIDEKLPFLRSA 2597


>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
            W06A7.3f protein.
          Length = 2488

 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 40/137 (29%), Positives = 72/137 (52%)
 Frame = +3

Query: 219  FRLYKNVLQAVQKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXXYELRRLFLVE 398
            F ++K V   ++KT+  HPF  +L  ++++                     +L++L  VE
Sbjct: 2342 FSVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIANKLKKLVFVE 2401

Query: 399  DLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKI 578
              ++S+KFG++LW LTY+ + F+G TL ILG + +F++PK YE N+  +D +L      +
Sbjct: 2402 SPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHL 2461

Query: 579  NEITAKVRAAVPLGRRA 629
              +   +   +P  R A
Sbjct: 2462 KNVQNIIDEKLPFLRSA 2478


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +3

Query: 525  EMNKAQVDANLELARAKINEITAK 596
            E  KA++DAN+E  RAKI+EI  K
Sbjct: 2593 EKLKAEIDANIEETRAKISEIAGK 2616


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +3

Query: 525  EMNKAQVDANLELARAKINEITAK 596
            E  KA++DAN+E  RAKI+EI  K
Sbjct: 2593 EKLKAEIDANIEETRAKISEIAGK 2616


>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
          Length = 1518

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +3

Query: 525 EMNKAQVDANLELARAKINEITAK 596
           E  KA++DAN+E  RAKI+EI  K
Sbjct: 407 EKLKAEIDANIEETRAKISEIAGK 430


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +3

Query: 525  EMNKAQVDANLELARAKINEITAK 596
            E  KA++DAN+E  RAKI+EI  K
Sbjct: 2593 EKLKAEIDANIEETRAKISEIAGK 2616


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +3

Query: 525  EMNKAQVDANLELARAKINEITAK 596
            E  KA++DAN+E  RAKI+EI  K
Sbjct: 2593 EKLKAEIDANIEETRAKISEIAGK 2616


>Z83230-6|CAB05746.1|  336|Caenorhabditis elegans Hypothetical
           protein F56A8.6 protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 503 QRYPTEDDERDPVEARPHVREAPQQHAELQRVHQVLHQ 390
           Q+Y     ++ PV+ RP V++  Q H E Q+  ++L Q
Sbjct: 267 QQYKPPPQQQPPVQMRPPVQQPQQNHQEEQQNAELLMQ 304


>AL132864-5|CAH60767.2|  281|Caenorhabditis elegans Hypothetical
           protein Y53H1A.5 protein.
          Length = 281

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 512 QREQRYPTEDDERDPVEARPHVREAPQQHAELQR 411
           +RE R   ED  R P+E + ++ E+ +QHA  +R
Sbjct: 162 RREMRQKMEDSGRLPLERQKYMHESRRQHALKRR 195


>Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical protein
            H08M01.2b protein.
          Length = 1341

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -3

Query: 553  LASTCALFIS*AFGSVNSAIQP--RMMSVIPLKHAPTYVRHHSSTPN 419
            LA+  A+  S A+  VN A+    ++    PLK  PT+  + SSTP+
Sbjct: 898  LATPEAVDFSPAYSLVNDAVHTVIQVNGSTPLKSPPTFHSYESSTPD 944


>Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical protein
            H08M01.2a protein.
          Length = 1320

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -3

Query: 553  LASTCALFIS*AFGSVNSAIQP--RMMSVIPLKHAPTYVRHHSSTPN 419
            LA+  A+  S A+  VN A+    ++    PLK  PT+  + SSTP+
Sbjct: 898  LATPEAVDFSPAYSLVNDAVHTVIQVNGSTPLKSPPTFHSYESSTPD 944


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,369,171
Number of Sequences: 27780
Number of extensions: 114274
Number of successful extensions: 589
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)