Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16b18r
         (931 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    30   0.40 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   1.2  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    27   2.8  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   2.8  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   5.0  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   6.6  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = -2

Query: 516 YFKLYEYSNLN-IKLCNIMKINSVFVIVWVNLNVITLFKDSYISAFQNLISTIQL 355
           Y K+YE SNLN I+L  I+ +  +  +V    ++   F D  +SA   L+ T+QL
Sbjct: 405 YAKIYEKSNLNCIELVQIL-LRLLSEVVTYETSLFLNFLDEKVSAELLLLGTLQL 458


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = -3

Query: 233 LFCNFILASTKFHYSISFQLSLLMIFVKLV*NVKLVEMLLFFNI---ENVSISFTMTRLL 63
           LF  F+L    F +S SF   L  IF+    +  ++  L FF +     +S  F+++ LL
Sbjct: 118 LFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSLSHLL 177

Query: 62  SI 57
           S+
Sbjct: 178 SL 179


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -2

Query: 162 DLRKISLKCKTGRNVTVLQYRKRKHFIHYD*TTKHSLVTIYFYNLN 25
           +L+ +SL      + T  QYR+ K+ +H+   T   L+   F N++
Sbjct: 124 NLKSLSLPSHVAEDRTAQQYRQNKYQLHFSRITFDLLLHFLFENVS 169


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 740 IHYFELQKIYIFFNYERSVLSSLTKNIINLSGIRNSVIKVRVIHLFLNNI 591
           + YF L  + I   YE  +L  L+  ++ +  +R    KV VI LFLN I
Sbjct: 303 VWYFPLWHMGIS-GYEACILFELSPFLLGIPLLRKFASKVPVIFLFLNVI 351


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 761 LKICTHSIHYFELQKIYIFFNYERSVLSSLTKNIINL-SGIRNSVIKVRVIH 609
           L IC   ++ F+    + FFNY  S + S  K  +NL S   N ++   +++
Sbjct: 482 LTICKILLNNFD----WNFFNYNNSAIDSYAKCTLNLDSDFENGILTYEILY 529


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 504 YEYSNLNIKLCNIMKINSVFVIVWVNLNVI 415
           +EY     K    +KI+ VFV V+ NLN++
Sbjct: 99  FEYLIKEFKKDVFLKISDVFVCVYSNLNIL 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,511,198
Number of Sequences: 5004
Number of extensions: 68539
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)