Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16b17f
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24B11.08c |||COPII-coated vesicle component Erv46|Schizosacc... 28 1.00
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo... 27 2.3
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 27 2.3
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 4.0
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 26 5.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 7.0
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 9.3
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 25 9.3
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 9.3
>SPAC24B11.08c |||COPII-coated vesicle component
Erv46|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 28.3 bits (60), Expect = 1.00
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -1
Query: 251 ELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSICTPQLAS 123
++LD+ + I ++ S TRL+ GE+IS DL I Q S
Sbjct: 87 DVLDVSGEFQRDIHHTVSKTRLSPSGEIISVDDLDIGNQQSIS 129
>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 435
Score = 27.9 bits (59), Expect = 1.3
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +3
Query: 342 NEVFNFIEDLQGGMRDIDRDKTDTINNSCNDRKAVTM*REREGRKGARVSDE*AYTTISI 521
N+V NF++ R+ R + D KA+T+ R+ + + + I I
Sbjct: 285 NKVANFVKAFNQDGREFIRSSVQKLLGFSKDEKAITVFPPRKRARKLEENKDPVRQDIPI 344
Query: 522 SPVFS 536
PVFS
Sbjct: 345 PPVFS 349
>SPBC1105.18c ||SPBC887.21c|peptide release
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/51 (33%), Positives = 20/51 (39%)
Frame = -1
Query: 353 KNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSG 201
K FISV F L + N HT + S Y E L D+ I G
Sbjct: 11 KTFISVRLNAFSCLAELNFRHTWYCSKKETPYQLERLQEEDIEETFICGKG 61
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 491 RNSSTFSSFPLPSHSNCFSVIAAIV 417
RN S S P P+H N FS+I I+
Sbjct: 1027 RNLSMHWSIPFPTHHNFFSIIPFIL 1051
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 317 ILGDFNSHHTSWGSSVSNSYGYELLDILDMY 225
+L FN H SW + S + Y++ ++L+ Y
Sbjct: 876 VLFQFNRHARSWIQNSSKAIPYQVKNLLESY 906
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 5.3
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Frame = -1
Query: 506 VCLLIRNSSTFSSFPLPSHSNC------FSVIAAIVDGICFVSIYVPHPSLQIFNEIKNF 345
+C L + F S P+ SH + F+ +AAI+ + + +Y P+ ++ I F
Sbjct: 59 ICHLFLLLNIFISIPIISHLSPGFMPVGFTALAAILLAMQIMFVYSPNAPERVTQRIICF 118
Query: 344 ISVLPRPFMILGDFNSHHTSWGSS 273
+ + + L H W S+
Sbjct: 119 LLAIDVLVVFLSPILRHREGWRSN 142
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 7.0
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Frame = -1
Query: 494 IRNSSTFSSFPLPSHSNCFSVIAAIVDGICFVSIYVPHPSLQIFNEIKNF-ISVLPRPFM 318
I +SST S P PS S+ ++I+ G + + ++ I + + + SV+P
Sbjct: 618 ISSSSTILSSPTPSTSSLMISSSSIISGSSSI-LSSSISTIPISSSLSTYSSSVIPSSST 676
Query: 317 ILGDFNSHHTSWG--SSVSNSYGYELLDILDMYSLCILN-SGSPTRLTKPGEVISAIDLS 147
++ +S S +S S+S ++ YS + N + S LT SAI S
Sbjct: 677 LVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTAMSS-SSAIPTS 735
Query: 146 ICTPQLASSLSWSTLCSTYNS 84
+ + L ++ S +TL S+ S
Sbjct: 736 VNSSTLITASSSNTLLSSITS 756
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -1
Query: 134 QLASSLSWSTLCSTYNSDHYPIIISFPLA 48
Q+ + L W C YN D +S PL+
Sbjct: 497 QITTWLKWPRYCEYYNFDIAETFLSIPLS 525
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 588 NLAKARFCIQNPWLFVLKRRQG*WIWWCMPTH 493
++ + FC +P+ V R G I+W M TH
Sbjct: 230 SVKQVNFCNDSPYNLVSCSRDGSIIFWDMRTH 261
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 356 IKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLC 216
+ +FIS P + D +S W S + YE ++ L +Y LC
Sbjct: 237 VLSFISRDPSTQVPYKDMSSCEALWISRMDELSNYERIEQLALYLLC 283
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,855
Number of Sequences: 5004
Number of extensions: 51428
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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