Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16b17f
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    56   2e-08
U80028-2|AAN73869.1|  351|Caenorhabditis elegans Serpentine rece...    31   0.53 
U50312-3|AAA92320.2|  494|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF067950-4|AAG24157.1|  351|Caenorhabditis elegans Serpentine re...    28   6.5  
AF022981-10|AAG24203.1|  360|Caenorhabditis elegans Serpentine r...    27   8.6  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
 Frame = -1

Query: 320 MILGDFNSHHTSWGSSVS-NSYGYELLDILDMY-SLCILNSGSPTRLTKPGEVISAIDLS 147
           +I GD N+HH++W S  S ++ G EL +++D++  L I N    TR       IS+ D++
Sbjct: 35  IISGDVNAHHSAWHSEGSEDTRGRELAELIDLHPDLIIQNEQVHTRADTYS--ISSPDIT 92

Query: 146 ICTPQLASSLSWSTLCSTYNSDHYPI 69
           ICT  LA+   WSTL     SDH P+
Sbjct: 93  ICTADLATKCHWSTLYK-LGSDHIPM 117


>U80028-2|AAN73869.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein88 protein.
          Length = 351

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = -1

Query: 515 YGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGI--CFVSIYVPHPSLQIFN-EIKNF 345
           +GG C+L ++    SS+ +P  +  F V   + D    C V+ Y+  P+L  F+  + NF
Sbjct: 45  FGGYCILYKSPKEMSSYRVPLFN--FHVWTCLADVFLNCLVTPYIFLPTLTGFSVGLLNF 102

Query: 344 ISVLPR 327
           + V P+
Sbjct: 103 LGVPPK 108


>U50312-3|AAA92320.2|  494|Caenorhabditis elegans Hypothetical
           protein B0222.3 protein.
          Length = 494

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -1

Query: 443 CFSVIAAIVDGICFVSIY--VPHPSLQIFNEIKNFISVLPRPFMILGDFNSHHTSWGSS 273
           C   I+ ++ GI    IY  V H  L+  N +KN +  LP  + +   FN+    W  S
Sbjct: 166 CSWFISPVLSGIISSIIYMIVDHTVLRTANPLKNGLRALPVFYFVCMAFNALMVFWDGS 224


>AF067950-4|AAG24157.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein87 protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -1

Query: 515 YGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGI--CFVSIYVPHPSLQIFN-EIKNF 345
           +GG C+L ++    S++ +P  +  F V   + D    C  + Y+  P+L  F+  + NF
Sbjct: 45  FGGYCILYKSPKEMSTYRIPLFN--FHVWTCLADVFLNCLGTPYIFLPTLTGFSVGLLNF 102

Query: 344 ISVLPR 327
           + V P+
Sbjct: 103 LGVPPK 108


>AF022981-10|AAG24203.1|  360|Caenorhabditis elegans Serpentine
           receptor, class h protein82 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -1

Query: 515 YGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGICFVSIYVPHPSLQIFN-EIKNFIS 339
           +GG C+L +++S   S+ LP  +  F      +      + Y   PSL  F+    NF+ 
Sbjct: 45  FGGYCILFKSTSQMGSYRLPLFNFHFWTCLVDIMINALATPYFFFPSLAGFSVGFLNFLG 104

Query: 338 VLP 330
           V P
Sbjct: 105 VPP 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,672,129
Number of Sequences: 27780
Number of extensions: 282207
Number of successful extensions: 675
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)