Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16b16r
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.90
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 28 1.6
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 27 2.1
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 27 3.6
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 26 4.8
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb... 26 4.8
SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr ... 26 6.4
SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr ... 26 6.4
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 6.4
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.4
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 26 6.4
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 28.7 bits (61), Expect = 0.90
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 9 VNGFEGSIQVKELMLVSTTGVGVHWNCSFQKTQCLP-THFGRRQGHPSQYYRSHGHHPGP 185
++G E + +K S H+ S++ ++ +H+ + H S+Y R+ PG
Sbjct: 165 LDGEELFVSIKRFPFESLHKNHKHYENSYRPSRSQNNSHYNDKSFHRSRYSRARSRSPGS 224
Query: 186 NRRRICDQSRRDH 224
N DQS H
Sbjct: 225 NISEYSDQSPPYH 237
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -1
Query: 527 PVVVSQVKYLMFTLPLTIPNSLRRITTRM*ASYE*HMPSTSAQISSRV 384
P ++ V YL+ T+ T+P +L I M A+ + PS A + R+
Sbjct: 288 PNILQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRI 335
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 27.5 bits (58), Expect = 2.1
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Frame = +3
Query: 39 KELMLVSTTGVGVHWNCSFQKTQCLPTHFGRRQGHPSQYY----RSHGHHPGPNRRRICD 206
+E ML T+G + H+ S YY R HG P P RR +
Sbjct: 120 RESMLYHTSGSYPESQPPYSSYSTDAPHYYHAGSESSAYYDSRSRLHGIQPPPKRRTLSP 179
Query: 207 QSRRDHDP 230
RR DP
Sbjct: 180 PPRRLADP 187
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 290 PSDALPP*TVVPHPSRSTKIPWGITTPCWIIAPCWI 397
PSDA T VP + S PW TTP P W+
Sbjct: 21 PSDAQSSPTFVPSANPSLTTPWLQTTPS-ANRPTWL 55
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 704 VYWRAPQPGPNLKYSYPS*ING 639
+YW + GPN K YPS I G
Sbjct: 75 LYWGGIEKGPNGKGHYPSGIRG 96
>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 240
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 441 HPCRNSPQRIGDG*RQSEHKIFHLA--HYDGKIQR 539
H C +P+ I G RQ E ++H+A +D KI R
Sbjct: 11 HLCMRNPKLIRIGLRQVESIVYHVAKPSHDDKIPR 45
>SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 145
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 219 DHDPYTGSCSFLCWS 263
DH+PYT S S +C S
Sbjct: 91 DHEPYTASLSHICHS 105
>SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 145
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 219 DHDPYTGSCSFLCWS 263
DH+PYT S S +C S
Sbjct: 91 DHEPYTASLSHICHS 105
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 126 QNALVGIVSFGKSNSNERLPP*YSPASVLSPEWILQNRLPN 4
Q A+ GI+ G+ + LPP S L+PE + R+ N
Sbjct: 166 QRAIQGILEEGEEDELLELPPETSGRKKLTPEEMALRRIEN 206
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 601 LPFNXYLFPWRIXRSCIPSHYRWIFP 524
LP + + F W +C P H WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -1
Query: 164 TTIILTWVPLPSSKMRW*ALCLLERAI-PMN-AYPRSTH 54
T+I+L W PL S R +LCL + +N + P +TH
Sbjct: 93 TSIVLEWDPLQLSTARLKSLCLYRNNVRVLNISNPMTTH 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,390,041
Number of Sequences: 5004
Number of extensions: 76770
Number of successful extensions: 220
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -