Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16b12r
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   2.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    24   2.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   4.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   4.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   8.6  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 128 SIKCTTVANVDLCMINKMF 72
           S KC  V +++LCM  ++F
Sbjct: 182 SCKCIYVQSINLCMAGRLF 200


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 603 IIEYCQNKNYIKNCT*KKKQFTNKAKGSCVKQLNCT 710
           ++E+ +NKN        KK F NK  G+    +  T
Sbjct: 86  LVEFSENKNCNAGSLTVKKNFANKYCGNITLNIEST 121


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 46  NIYSFLYLLNILFIIHKSTFAT--VVHLILNTLLHLKVINRFKAFKLT 183
           +IYSFL  LN++F+     +++   + +     + ++++N   A KL+
Sbjct: 477 SIYSFLERLNLIFMSSSLQWSSTHTLDVAWRRKVTIEILNSLSATKLS 524


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 46  NIYSFLYLLNILFIIHKSTFAT--VVHLILNTLLHLKVINRFKAFKLT 183
           +IYSFL  LN++F+     +++   + +     + ++++N   A KL+
Sbjct: 515 SIYSFLERLNLIFMSSSLQWSSTHTLDVAWRRKVTIEILNSLSATKLS 562


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 440 KRPSGYFFTHTFS*TC 393
           KR  GY+  HT+  TC
Sbjct: 241 KRRLGYYLFHTYIPTC 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,361
Number of Sequences: 438
Number of extensions: 4755
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)