Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16b12f
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p... 122 8e-29
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 31 0.18
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi... 29 0.56
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 27 3.0
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 26 6.9
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 26 6.9
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr... 25 9.1
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 25 9.1
>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 122 bits (293), Expect = 8e-29
Identities = 57/232 (24%), Positives = 125/232 (53%), Gaps = 4/232 (1%)
Frame = +1
Query: 91 TEYWVISAPG-DKTCQQTWDTLNNATKSGN---LSVNYKFPIPDLKVGTLDQLVGLSDDL 258
+++W++S P + D + SG+ +S F +P KV +LD L+ S+ L
Sbjct: 4 SDFWILSVPSRGGSNADLCDDIERLLVSGSTSLISTVAPFDVPPFKVESLDVLISQSEQL 63
Query: 259 GKLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSL 438
K D K++ + + L + M + Y++ F W+ +++ + +++
Sbjct: 64 TKQDAQCASAISKISDIIKNTVSSSSGDLKDYFMVQDKSPLEYVSSFAWNSSRFHMNKTI 123
Query: 439 RNIADIISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILD 618
I+D I+ ++ + D++ + +++ N++KKQ+G+L ++LA++V +E +
Sbjct: 124 SEISDRITSEIISFENDIRTRQTSFQQASSAFQNMQKKQSGNLSQKSLANIVHEEDVVHG 183
Query: 619 SEYLTTLLVIVPKSMFNDWNANYEKITDMIVPRSTQLVHQDNDYGLFTVTLF 774
S+YLT + + VP ++ + +YE +TD+++PRS + + QD+++ L+TV +F
Sbjct: 184 SDYLTNVFIAVPLNLEKQFLNSYETLTDLVIPRSAKKLDQDSEFVLYTVVVF 235
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 31.1 bits (67), Expect = 0.18
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Frame = +1
Query: 505 SAYNALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKSMFNDWNAN 684
S ++ L + H +E K L L + + +Y LL I K ND+ A
Sbjct: 194 SKFSKLGPSEHEIEVKHFAKEFESILRYLYLDTNAVFTKQYNNALLSIGKKFQLNDFIAL 253
Query: 685 YEKITDMIVPR---STQLVHQDNDYGLF 759
YEK + + R QL ND G F
Sbjct: 254 YEKDREQLHSRDWKKIQLAKTQNDLGEF 281
>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 29.5 bits (63), Expect = 0.56
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 427 KQSLRNIADIISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKE 603
K +NIA + V +I D V+ N +KG L K+ + NL D+ K+E
Sbjct: 218 KNKQQNIAGVQGTMVTKIGYDELVRQGDSNLMKGTGTKLNGKEVAEVPKINLLDVEKQE 276
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 27.1 bits (57), Expect = 3.0
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Frame = +3
Query: 504 LRLQRSQRKPTQFR-EETDRELVD--PQL-GRSSQEGALHLGQRVPDHTPGHRAQVNVQR 671
LRL S + FR ++T RE+ PQ+ G +++ A HLG+R + P A
Sbjct: 17 LRLLPSTEEFDDFRRQDTGREVYSQIPQIEGSTAKRDAEHLGKRHREFLPRVTAYCTCDT 76
Query: 672 LECQLREDNGHDRAALHPARP 734
L R + H RP
Sbjct: 77 FRVDLLFKFFQSRRSSHKTRP 97
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -3
Query: 737 WWTSWVERGTIMSVIFS*LAFQSLNIDLGTMTRSVVRYSLSKMKCSF 597
W S RGT ++ + + ++ +DL T T++ V Y+ ++ SF
Sbjct: 220 WLASKTARGTSCALSSAVASNLAIGLDLVTATQNAVSYTQRALEMSF 266
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 292 RKVAQYLGEVLEDQRDKLHENLMAN 366
+KVAQ L E+L DQR L + +AN
Sbjct: 921 KKVAQRLTELLSDQRVHLPSSKIAN 945
>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 9.1
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +1
Query: 187 NYKFPIPDLKVGTLDQLVGLSD--DLGKLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLM 360
N FP+ LK Q+ SD + GKL +G+ +K +Y + + D L
Sbjct: 68 NEFFPLLSLKKEITLQIERCSDPNERGKLVNEAKGLKKKTEEYNKIISKVTNDLYQYCLA 127
Query: 361 ANNSDLPT 384
N+ LPT
Sbjct: 128 VPNTTLPT 135
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.4 bits (53), Expect = 9.1
Identities = 23/73 (31%), Positives = 34/73 (46%)
Frame = -3
Query: 293 LVTPSTKVSSLPRSSDSPTN*SKVPTLRSGIGNL*LTLRLPDLVALFRVSQVC*QVLSPG 114
L PS V SLPR+S+SP+ P + + + D+ A F SQ +
Sbjct: 734 LSAPSD-VGSLPRASNSPSRPVMHPNTQG------INTEIKDMAAQFPNSQTGGLTPNSW 786
Query: 113 ALITQYSVIFTTR 75
++ T SV FTT+
Sbjct: 787 SMNTNVSVPFTTQ 799
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,659
Number of Sequences: 5004
Number of extensions: 64133
Number of successful extensions: 207
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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