Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16b09r
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   133   1e-32
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   132   3e-32
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   2.5  
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar...    25   4.3  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   4.3  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   7.5  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   7.5  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    24   9.9  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    24   9.9  
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    24   9.9  

>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  133 bits (321), Expect = 1e-32
 Identities = 60/115 (52%), Positives = 80/115 (69%)
 Frame = -1

Query: 436 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 257
           M  V+VKDV+  K +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 256 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEK 92
            RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSLE + ++EK
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEK 115



 Score = 31.1 bits (67), Expect = 0.087
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -2

Query: 102 LLRKFRXGGRILTTQGRRDLDRIA 31
           +L K   GGR ++ QG+RDLDRIA
Sbjct: 112 VLEKSDNGGRRISQQGQRDLDRIA 135


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  132 bits (318), Expect = 3e-32
 Identities = 59/115 (51%), Positives = 80/115 (69%)
 Frame = -1

Query: 436 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 257
           M  V+VKDV+  + +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 256 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEK 92
            RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSLE + ++EK
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEK 115



 Score = 31.1 bits (67), Expect = 0.087
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -2

Query: 102 LLRKFRXGGRILTTQGRRDLDRIA 31
           +L K   GGR ++ QG+RDLDRIA
Sbjct: 112 VLEKSDNGGRRISQQGQRDLDRIA 135


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 197 TEDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQL 307
           ++D+G +L+ N+ +N+  TK+ S   I+       QL
Sbjct: 109 SQDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQL 145


>SPAC26H5.09c |||GFO/IDH/MocA family
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 10  GL*TNLGSDSVKVSSTLCGENATTXPELSQQASMPPTIAKPCVQYCL 150
           GL  +LGS  +  + TL G   +   +L  Q  +PP   + C +  L
Sbjct: 176 GLVYDLGSHLIDQAITLFGTPHSVTAKLESQRQIPPLEVEDCFRIVL 222


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 321 QLASKSWLRMTLIGSMCVVL 262
           +L SKSWL +  +G +C+ L
Sbjct: 359 KLLSKSWLSLEPVGQICISL 378


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 273 CVVLPSFVIFTFAHLLESRL 214
           C+V  S V+F  AH+ E RL
Sbjct: 176 CIVSSSLVLFDNAHVTEGRL 195


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -2

Query: 261 PSFVIFTFAHLLESRLSPRSSVGANVMELHLHISAGHQAVLHARLCNRW 115
           P   I TF+  + +      + G +V +L+L + + H   L +R C +W
Sbjct: 261 PCLYIETFSFPISTINQLFKAHGMSVEQLNLFLKSIHYIGLCSRFCKQW 309


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 163 FCRSSGSIARKALQSLEALKLVEKVQXRWSHSHH 62
           FC  S  +A + +  +   K+ +  Q +   SHH
Sbjct: 522 FCGMSMEMANRVISEIRTTKIYKAQQHKQKSSHH 555


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 418 KDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKE 305
           +D E DKI ++V  HL K  K +  +   L K    KE
Sbjct: 85  EDEEADKIYQSVEEHLSKRRKSQREKQEQLQKEKYEKE 122


>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 236 LTCWSQDCHQDLRWAQT*WSYTFTFLQVIRQY 141
           LTCW++D   D+  +   W   +TF+Q I ++
Sbjct: 196 LTCWNRDDKTDMPSSPREW---YTFVQSISKH 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,532
Number of Sequences: 5004
Number of extensions: 35103
Number of successful extensions: 113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)