Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16b09r
(466 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical pr... 134 2e-32
AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal pro... 134 2e-32
Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z46812-6|CAA86848.2| 546|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z37093-8|CAA85469.2| 546|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z37092-11|CAA85461.2| 334|Caenorhabditis elegans Hypothetical p... 27 8.8
>Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical
protein T05F1.3 protein.
Length = 146
Score = 134 bits (325), Expect = 2e-32
Identities = 62/114 (54%), Positives = 81/114 (71%)
Frame = -1
Query: 433 RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 254
R+ ++KDV+Q + K++A LKK+GKVKVPE DLVK KELAP DPDWFY R A++
Sbjct: 3 RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62
Query: 253 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEK 92
RH+Y R P G+ K++GG KR GV P+HF S+G+ RKA+Q LE +K VEK
Sbjct: 63 RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEK 115
Score = 34.7 bits (76), Expect = 0.033
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = -2
Query: 78 GRILTTQGRRDLDRIAAQVRLKAKQ 4
GRIL+ QGR+DLDRIA +R +Q
Sbjct: 121 GRILSKQGRKDLDRIATSLRSSGQQ 145
>AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal
protein S19 protein.
Length = 146
Score = 134 bits (325), Expect = 2e-32
Identities = 62/114 (54%), Positives = 81/114 (71%)
Frame = -1
Query: 433 RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 254
R+ ++KDV+Q + K++A LKK+GKVKVPE DLVK KELAP DPDWFY R A++
Sbjct: 3 RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62
Query: 253 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEK 92
RH+Y R P G+ K++GG KR GV P+HF S+G+ RKA+Q LE +K VEK
Sbjct: 63 RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEK 115
Score = 34.7 bits (76), Expect = 0.033
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = -2
Query: 78 GRILTTQGRRDLDRIAAQVRLKAKQ 4
GRIL+ QGR+DLDRIA +R +Q
Sbjct: 121 GRILSKQGRKDLDRIATSLRSSGQQ 145
>Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical
protein C04A11.3 protein.
Length = 1228
Score = 26.6 bits (56), Expect = 8.8
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = -1
Query: 466 AFFRLPTQGKMRSVTVKDVEQDKI-VKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYD 290
A F+ P+Q S+TV+D+ Q K ++ +A + P+ + ++ R +
Sbjct: 644 ALFKKPSQDMSASLTVRDMAQQKTELRVSSASTPTKTRASPPKRAESNQSVRTSGSSN-- 701
Query: 289 PDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNG 179
V+ +A Y+ P V V + F G +RNG
Sbjct: 702 ---SVVQHSASSSTDYV--PTSVSAVPEYFDGPRRNG 733
>Z46812-6|CAA86848.2| 546|Caenorhabditis elegans Hypothetical
protein ZK669.1b protein.
Length = 546
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 203 DLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 313
D+GD S + V +DGS H++ I++I +++
Sbjct: 495 DMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 531
>Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 203 DLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 313
D+GD S + V +DGS H++ I++I +++
Sbjct: 724 DMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 760
>Z37093-8|CAA85469.2| 546|Caenorhabditis elegans Hypothetical
protein ZK669.1b protein.
Length = 546
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 203 DLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 313
D+GD S + V +DGS H++ I++I +++
Sbjct: 495 DMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 531
>Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 203 DLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 313
D+GD S + V +DGS H++ I++I +++
Sbjct: 724 DMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 760
>Z37092-11|CAA85461.2| 334|Caenorhabditis elegans Hypothetical
protein F44F4.13 protein.
Length = 334
Score = 26.6 bits (56), Expect = 8.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 273 CVVLPSFVIFTFAHLLESRL 214
C+ +PS +IFTF + RL
Sbjct: 289 CIAIPSLIIFTFRFIKNQRL 308
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,770,246
Number of Sequences: 27780
Number of extensions: 210970
Number of successful extensions: 556
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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