Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16b08f
         (478 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   1.5  
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    27   1.5  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   1.9  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    26   2.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   7.9  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   7.9  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    25   7.9  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 128  LRAAATSNKALCITLHYYFQLLTEF-VNEVLQTRCCLRLLVN 6
            LR +   +K L  ++ +Y + L+E   N+VL +RCC   L N
Sbjct: 2237 LRMSTFRSKMLTQSITHYLKCLSESDENDVLISRCCTMWLSN 2278


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 42  DLIYEFSQQLKIIMQRNTQSFV 107
           +  Y+FSQ +K ++QRN + FV
Sbjct: 234 EFYYKFSQYIKRMLQRNAKDFV 255


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 126 QNYNQGSRFGLNRPLPQNGSGFSPSPHMPQTYQPHG 233
           Q+YNQG RFG N       S F  +P    +  P G
Sbjct: 219 QDYNQGRRFG-NASSTNTTSAFGSTPAFGASTTPFG 253


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = +2

Query: 11  QAIANNTL----FEGPHLRIQSTIENN-NAT*YTKLCWRLQQP 124
           +A  +NTL     EG + R Q  ++ N NA  + K CWR ++P
Sbjct: 9   RASISNTLVTLTIEGNNDRYQVILDKNVNAKQFVKTCWRNKKP 51


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 153  GLNRPLPQNGSGFSPSPHMPQTYQPH 230
            G  +P+P   +G+ P    P   QPH
Sbjct: 1061 GYMQPIPVQATGYQPLMVQPTGLQPH 1086


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = +3

Query: 159 NRPLPQNGSGFSPSPHMPQTYQPH---GCFMTASM-IRKLSNPNS 281
           N P+    S    SPH P   QPH   G F    + +R L+NP +
Sbjct: 136 NPPVDTVISDSPTSPHPPSFVQPHPPYGIFAAPILDVRVLTNPGA 180


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 296 LNFVAGVGIAEFTNHRGCHKTTMWLVRLWHVRRWAETG 183
           LN ++ V ++E T+  GC  T + +  L    +W   G
Sbjct: 349 LNVLSKVDLSEGTSILGCEMTDIGVHHLIETMKWMSAG 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,728,438
Number of Sequences: 5004
Number of extensions: 33868
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)