Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16b08f
         (478 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1793 - 39916024-39916824                                         30   1.1  
07_01_1058 - 9292890-9293655,9293831-9294600                           29   2.6  
06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325...    28   4.5  
04_04_1285 - 32382614-32382720,32383032-32383710,32383816-323839...    28   4.5  
10_05_0106 - 9220354-9220812,9220975-9221124                           27   7.8  

>01_06_1793 - 39916024-39916824
          Length = 266

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 21/61 (34%), Positives = 27/61 (44%)
 Frame = +3

Query: 108 GGCSSPQNYNQGSRFGLNRPLPQNGSGFSPSPHMPQTYQPHGCFMTASMIRKLSNPNSGD 287
           GG S+P +Y  GS  G   P P    G S S     TY  +  +MT        N NSG+
Sbjct: 178 GGGSAPASYGYGSNSGWGAPAPPRQEGGSGS---APTYL-NVIYMTQPGSSSSQNENSGE 233

Query: 288 K 290
           +
Sbjct: 234 R 234


>07_01_1058 - 9292890-9293655,9293831-9294600
          Length = 511

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 51  YEFSQQLKIIMQRNTQSFVGGCSSPQNYNQGSRFGLNRPLPQNGSGFSPSPHMPQT 218
           Y  S+ LK +      +  GG    ++Y  G  FGL RP P      +  P +P+T
Sbjct: 128 YNLSKLLKDVAYIGFSAATGGTLRSRHYVLGWSFGLGRPAP--AIDITKLPKLPRT 181


>06_01_0456 -
           3249662-3249710,3249838-3250451,3250694-3250780,
           3251509-3252384,3252445-3252534,3252645-3252696,
           3253117-3253168,3253265-3253363,3253444-3253528,
           3253620-3253668,3253749-3253816,3254417-3254482,
           3255690-3255741,3256685-3256767,3256915-3256946,
           3257271-3257466,3258542-3258607,3259797-3259869,
           3260010-3260224
          Length = 967

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 126 QNYNQGSRFGLNRPLPQNGSGFSPSPHMP 212
           QNY+QG   GL    PQN  G  P P +P
Sbjct: 753 QNYHQGQFIGLT--APQNFMGTRPPPGVP 779


>04_04_1285 -
           32382614-32382720,32383032-32383710,32383816-32383926,
           32384007-32384065,32384163-32384271,32384387-32384575,
           32384650-32385476,32385501-32385633
          Length = 737

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +3

Query: 117 SSPQNYNQGSRFGLNRPLPQNGSGFSPSPHMPQTYQPHGCFMTASMIRKLSNPNSGDK 290
           S+P  Y   S +  N P P +G+    S   P  Y P+   M   M +++  P  GD+
Sbjct: 598 STPNQYQSHSTYP-NTPFPGHGNSVYDSNGGPGPYNPNPYSMNTDMQQRIQAP-IGDR 653


>10_05_0106 - 9220354-9220812,9220975-9221124
          Length = 202

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
 Frame = -3

Query: 227 WLVRLWHVRRWAETGAVLWQ----RSVEAETTTLIVVLRAAATSNKALCITLHY 78
           W VR   +  W   GA LW     R VE    TL   L       + LC TL Y
Sbjct: 22  WSVRFSWLPEWRRGGAGLWYPLIVRLVEPVAYTLRTQLHRLRLEIEILCGTLEY 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,996,541
Number of Sequences: 37544
Number of extensions: 220605
Number of successful extensions: 615
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)