Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16b07r
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    28   1.4  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   2.4  
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    26   5.6  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    25   9.9  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   9.9  

>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 489  PYLDRRLIAGELELGVLERNIESALYGGLQ-LQSDHSALHHLHAW 358
            P  D  L   E++ G+LE  +ES + G +  + +D S LH + A+
Sbjct: 1133 PMNDFSLSFSEIKGGILESPVESPMTGTISPIDADESVLHDIPAY 1177


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 429 IESALYGGLQLQSDHSALHHLHAWLQ 352
           I  +L GGL+L+ DH+  H L  +LQ
Sbjct: 428 IRISLTGGLRLEQDHACKHALPQFLQ 453


>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 782 HSNWGLTAAHCTGL 741
           H+NWG+T A  TGL
Sbjct: 338 HANWGITQAPATGL 351


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -2

Query: 683 FETTKYINHPEYSENLNVVQPHDIGLIDFGRKIEFNDYIQPI 558
           FE  K+IN+    +NL +V+      + +  KI +     P+
Sbjct: 33  FEKNKFINYQRIKDNLEIVKKRLNRPLTYSEKILYGHLDDPV 74


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 439 KNTQFKFSGDEPPVQVRPHP 498
           +NTQ   SG++PP Q  P+P
Sbjct: 569 RNTQTLSSGNQPPQQSGPNP 588


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,434,764
Number of Sequences: 5004
Number of extensions: 71216
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)