Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16b07r
(825 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 57 1e-08
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 54 1e-07
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 50 2e-06
Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical pr... 38 0.007
AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf (tbp-asso... 31 1.3
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical... 28 7.1
Z75955-2|CAB00112.1| 355|Caenorhabditis elegans Hypothetical pr... 28 9.3
Z74039-3|CAA98502.1| 410|Caenorhabditis elegans Hypothetical pr... 28 9.3
U50311-1|AAA92307.1| 492|Caenorhabditis elegans Hypothetical pr... 28 9.3
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 57.2 bits (132), Expect = 1e-08
Identities = 59/216 (27%), Positives = 86/216 (39%), Gaps = 7/216 (3%)
Frame = -2
Query: 800 CGATIIHSNWGLTAAHC--TGLRVT---IIVRAGAVNLTRPGLLFETTKYINHPEYSENL 636
CGA+I+ +TAAHC RV+ ++V N T E Y+ +
Sbjct: 54 CGASILDKTHLITAAHCFEEDERVSSYEVVVGDWDNNQTDGN---EQIFYLQRIHFYPLY 110
Query: 635 NVVQPHDIGLIDFGRK-IEFNDYIQPIRLQRSADKNRNYDNVRLVAXXXXXXXXXXXSPE 459
+ HDI +++ IEFN+Y QPI L K+ Y R + E
Sbjct: 111 KDIFSHDIAILEIPYPGIEFNEYAQPICLP---SKDFVYTPGRQCVVSGWGSMGLRYA-E 166
Query: 458 NLNWVFLNGISNLRCMVAYNFSPTIQPSTICTLGYNDTTQSTCQGDSGGPLTVIDEDGQI 279
L + I+ C+ + ++ S C GY + +CQGDSGGP EDG
Sbjct: 167 RLQAALIPIINRFDCVNSSQIYSSMSRSAFCA-GYLEGGIDSCQGDSGGPFACRREDGAF 225
Query: 278 TQVGVTSFVSSEGC-HVDIPSGFIRPGHYLDWFKTV 174
GV S+ +GC P + YL W +
Sbjct: 226 VLAGVISW--GDGCAQKKQPGIYTMVAPYLSWISAI 259
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 54.0 bits (124), Expect = 1e-07
Identities = 64/229 (27%), Positives = 94/229 (41%), Gaps = 18/229 (7%)
Frame = -2
Query: 800 CGATIIHSNWGLTAAHCT---GLRVTIIVRAGAVNLTRPGLLFETTKYINHPEYSENLNV 630
CGAT+I W +TAAHC R + VR N R + E YI H Y+ N
Sbjct: 66 CGATVIDDFWLVTAAHCALQLQTRSFVYVREPKNNRERSFSVKEA--YI-HSGYN---NQ 119
Query: 629 VQPHDIGLIDFGRKIEFNDYIQPIRLQRSADKN-RNYDNVRLVAXXXXXXXXXXXSPENL 453
+DI L+ + I+P+ L K + Y N ++ P+ +
Sbjct: 120 TADNDIALLRISSDLSKLG-IKPVCLVHDDSKLLKQYKNGVVIGYGLTLGEDSSGEPKLI 178
Query: 452 NWVFLNG-----ISNLRCMVAYNF----SPTIQPSTICTLGYNDTTQSTCQGDSGGPLTV 300
N L IS+ C+ + F S I IC Y T GDSGGPL +
Sbjct: 179 NSQTLQSTSVPIISDDDCVKTWRFLSLLSVKITGYQICAGAY---LHGTAPGDSGGPLLI 235
Query: 299 IDEDGQITQVGVTSFVSSEGCH--VD---IPSGFIRPGHYLDWFKTVTG 168
+G+ Q+G+TS+ ++G +D P + R Y+ W + V G
Sbjct: 236 HKSNGEYVQIGITSY-GADGLDGVIDQGKFPGVYTRISKYVPWIQGVIG 283
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 50.0 bits (114), Expect = 2e-06
Identities = 54/191 (28%), Positives = 80/191 (41%), Gaps = 5/191 (2%)
Frame = -2
Query: 812 GVNACGATIIHSNWGLTAAHCTGLR---VTIIVRAGAVNLTRPGLLFETTKYINHPEYSE 642
G + CG ++I N+ LTAAHC + VR G + + G T HP Y
Sbjct: 80 GHHRCGGSLIDPNFVLTAAHCFAKDRRPTSYSVRVGG-HRSGSGSPHRVTAVSIHPWY-- 136
Query: 641 NLNVVQPHDIGLIDFGRKIEFNDYIQPIRLQR-SADKNRNYDNVRLVAXXXXXXXXXXXS 465
N+ +D ++ + + +PI L A +NR + +V S
Sbjct: 137 NIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLPAVENR----LCVVTGWGSTIEGSSLS 192
Query: 464 PENLNWVFLNGISNLRCMVAYNFSPTIQ-PSTICTLGYNDTTQSTCQGDSGGPLTVIDED 288
L + + +S L C N+ I PS +C GY+ +CQGDSGGPL + D
Sbjct: 193 APTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCA-GYSYGKIDSCQGDSGGPL-MCARD 250
Query: 287 GQITQVGVTSF 255
G GV S+
Sbjct: 251 GHWELTGVVSW 261
>Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical
protein F31D4.6 protein.
Length = 292
Score = 38.3 bits (85), Expect = 0.007
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = -2
Query: 371 ICTLGYNDTTQS---TCQGDSGGPLTVIDED-GQITQVGVTSFVSSEGCHVDIPSGFIRP 204
IC N + S TC GDSGG L D++ G+ + +TSF + GC ++ + F R
Sbjct: 219 ICATSMNVSNYSAPRTCHGDSGGGLEYRDDNYGRAFLIAITSF-GTRGCPSNMLARFTRV 277
Query: 203 GHYLDWFKTVTGL 165
YL+ TG+
Sbjct: 278 DMYLNLICNYTGV 290
>AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 4
protein.
Length = 523
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 208 GPGTTSTGLRRSPV*ISIGHRAHQKHPRQRKRLVQQKHP 92
GPG S + PV +GH+ Q HP + +QQ+HP
Sbjct: 257 GPGGPSPMGLQGPVRGPMGHQMVQMHPPPPPQQIQQQHP 295
>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
protein Y43F8B.3a protein.
Length = 1816
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 389 TIQPSTICTLGYNDTTQSTCQGDSGGPLTVIDEDG 285
T C LGY+D T CQ + G P +++ ++G
Sbjct: 552 TCSTGYFCHLGYDDATTVCCQSE-GDPCSLVVKEG 585
>Z75955-2|CAB00112.1| 355|Caenorhabditis elegans Hypothetical
protein R07B7.3 protein.
Length = 355
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = -3
Query: 268 ESLRSCPAKAATWIYLQVLSGPGTTSTGLRRSPV*ISIGHRAHQKHPRQRKRLVQQKHPT 89
+ +R P K + Q+++ P S +RR+P + Q P+QR+ ++ Q +
Sbjct: 173 QHVRQAPVK----VVRQIITAP-VQSQVIRRAPQ-----QQVRQNRPQQRRNVIIQSQQS 222
Query: 88 RQRRPT 71
R+ RPT
Sbjct: 223 RRFRPT 228
>Z74039-3|CAA98502.1| 410|Caenorhabditis elegans Hypothetical
protein K03B8.3 protein.
Length = 410
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -2
Query: 395 SPTIQPSTICTLGYNDTT---QSTCQGDSGGPLTVIDEDGQITQVGVTSFVSSEGCHVD 228
+P+ IC LGY S D+G PL V D+ ++ VG+ +F S C ++
Sbjct: 276 NPSKCSECICPLGYGGVLCDRPSLIGKDTGLPLEVKDKIIEVKVVGIDNFFSYPTCLIN 334
>U50311-1|AAA92307.1| 492|Caenorhabditis elegans Hypothetical
protein C25E10.5 protein.
Length = 492
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Frame = +2
Query: 71 CRSPLTCRVLLLY------QALPLSRVLLVCSVSN 157
C L+C VLLLY Q LP +V LVC++++
Sbjct: 318 CFGVLSCVVLLLYIFCRLGQILPQQKVFLVCTIAS 352
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,854,497
Number of Sequences: 27780
Number of extensions: 440690
Number of successful extensions: 1303
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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