Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16b07f
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    62   5e-10
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    54   8e-08
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    38   0.007
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    28   6.0  
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    28   8.0  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 59/209 (28%), Positives = 89/209 (42%), Gaps = 6/209 (2%)
 Frame = +2

Query: 131 SRIVSGWEASEGQFPYQLSIRMVSTVGGVNACGATIIHSNWGLTAAHC--TGLRVT---I 295
           +R+V G+E   G FP+  ++R  +T    + CGA+I+     +TAAHC     RV+   +
Sbjct: 25  ARVVGGFETVPGAFPWTAALRNKATKA--HHCGASILDKTHLITAAHCFEEDERVSSYEV 82

Query: 296 IVRAGAVNLTRPGLLFETTKYINHPEYSENLNVVQPHDIGLIDFGRK-IEFNDYIQPIRL 472
           +V     N T      E   Y+    +      +  HDI +++     IEFN+Y QPI L
Sbjct: 83  VVGDWDNNQTDGN---EQIFYLQRIHFYPLYKDIFSHDIAILEIPYPGIEFNEYAQPICL 139

Query: 473 QRSADKNRNYDNVRLVAXXXXXXXXXXXXPENLNWVFLNGISNLRCMVAYNFSPTIQPST 652
                K+  Y   R                E L    +  I+   C+ +     ++  S 
Sbjct: 140 P---SKDFVYTPGRQCVVSGWGSMGLRYA-ERLQAALIPIINRFDCVNSSQIYSSMSRSA 195

Query: 653 ICTLGYNDTTQSTCQGDSGGPLTVIDEDG 739
            C  GY +    +CQGDSGGP     EDG
Sbjct: 196 FCA-GYLEGGIDSCQGDSGGPFACRREDG 223


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 54/200 (27%), Positives = 89/200 (44%), Gaps = 5/200 (2%)
 Frame = +2

Query: 134 RIVSGWEASEGQFPYQLSIRMVSTVGGVNACGATIIHSNWGLTAAHCTGLR---VTIIVR 304
           R++ G E+S   +P+  +++++S +G  + CG ++I  N+ LTAAHC        +  VR
Sbjct: 57  RLIGGSESSPHSWPW--TVQLLSRLGH-HRCGGSLIDPNFVLTAAHCFAKDRRPTSYSVR 113

Query: 305 AGAVNLTRPGLLFETTKYINHPEYSENLNVVQPHDIGLIDFGRKIEFNDYIQPIRLQR-S 481
            G  + +  G     T    HP Y  N+     +D  ++     +  +   +PI L    
Sbjct: 114 VGG-HRSGSGSPHRVTAVSIHPWY--NIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLP 170

Query: 482 ADKNRNYDNVRLVAXXXXXXXXXXXXPENLNWVFLNGISNLRCMVAYNFSPTIQ-PSTIC 658
           A +NR    + +V                L  + +  +S L C    N+   I  PS +C
Sbjct: 171 AVENR----LCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLC 226

Query: 659 TLGYNDTTQSTCQGDSGGPL 718
             GY+     +CQGDSGGPL
Sbjct: 227 A-GYSYGKIDSCQGDSGGPL 245


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 50/185 (27%), Positives = 70/185 (37%), Gaps = 13/185 (7%)
 Frame = +2

Query: 224 CGATIIHSNWGLTAAHCT---GLRVTIIVRAGAVNLTRPGLLFETTKYINHPEYSENLNV 394
           CGAT+I   W +TAAHC      R  + VR    N  R    F   +   H  Y+   N 
Sbjct: 66  CGATVIDDFWLVTAAHCALQLQTRSFVYVREPKNNRERS---FSVKEAYIHSGYN---NQ 119

Query: 395 VQPHDIGLIDFGRKIEFNDYIQPIRLQRSADK-NRNYDNVRLVAXXXXXXXXXXXXPENL 571
              +DI L+     +     I+P+ L     K  + Y N  ++             P+ +
Sbjct: 120 TADNDIALLRISSDLS-KLGIKPVCLVHDDSKLLKQYKNGVVIGYGLTLGEDSSGEPKLI 178

Query: 572 NWVFLNG-----ISNLRCMVAYNF----SPTIQPSTICTLGYNDTTQSTCQGDSGGPLTV 724
           N   L       IS+  C+  + F    S  I    IC   Y      T  GDSGGPL +
Sbjct: 179 NSQTLQSTSVPIISDDDCVKTWRFLSLLSVKITGYQICAGAY---LHGTAPGDSGGPLLI 235

Query: 725 IDEDG 739
              +G
Sbjct: 236 HKSNG 240


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3a protein.
          Length = 1816

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 635 TIQPSTICTLGYNDTTQSTCQGDSGGPLTVIDEDG 739
           T      C LGY+D T   CQ + G P +++ ++G
Sbjct: 552 TCSTGYFCHLGYDDATTVCCQSE-GDPCSLVVKEG 585


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 173 PYQLSIRMVSTVGGVNA-CGATIIHSNWGLTAAHC 274
           P+ + IR+ +  G     CG T+I     LTAAHC
Sbjct: 44  PWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHC 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,233,171
Number of Sequences: 27780
Number of extensions: 363185
Number of successful extensions: 1129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)