Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16b07f
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    53   2e-09
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.99 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.99 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    23   3.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.3  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   7.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.2  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 53.2 bits (122), Expect = 2e-09
 Identities = 55/206 (26%), Positives = 81/206 (39%), Gaps = 10/206 (4%)
 Frame = +2

Query: 131 SRIVSGWEASEGQFPYQLSIRMVSTVGGVNACGATIIHSNWGLTAAHC----TGLRVTII 298
           SRIV G      +FP    I+     G +  CGATII   + LTAAHC       ++ I+
Sbjct: 159 SRIVGGTNTGINEFPMMAGIKRTYEPGMI--CGATIISKRYVLTAAHCIIDENTTKLAIV 216

Query: 299 VRA---GAVNLTRPGLLFETTKYINHPEYS-ENLNVVQPHDIGLIDFGRKIEFNDYIQP- 463
           V      +   T   +L    K I HP+Y     +  Q +DI L+   + I+F D + P 
Sbjct: 217 VGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPA 276

Query: 464 -IRLQRSADKNRNYDNVRLVAXXXXXXXXXXXXPENLNWVFLNGISNLRCMVAYNFSPTI 640
            +  Q   D     D   +                 L    LN ++ + C   Y +   I
Sbjct: 277 CLPFQHFLDSFAGSD---VTVLGWGHTSFNGMLSHILQKTTLNMLTQVEC---YKYYGNI 330

Query: 641 QPSTICTLGYNDTTQSTCQGDSGGPL 718
             + +C        +  CQ DSGGP+
Sbjct: 331 MVNAMCAYAKG---KDACQMDSGGPV 353


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 114 TVPCRVLELYQDGRRVKASSLT 179
           T P + + LYQDGR + +S LT
Sbjct: 104 TSPNKFVRLYQDGRVLYSSRLT 125


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 581 FLNGISNLRCMVAYNFSPTIQPSTICTLGYNDTTQ 685
           FLNG+ NL   + +++     PS IC    N+T Q
Sbjct: 96  FLNGLDNLHEYLKFSYPRMRAPSFICE---NETRQ 127


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP + S+P PP   LR
Sbjct: 99  NNRPVYISQPRPPHPRLR 116



 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 292 NHRPSWSSEPDPPRLALR 345
           N+RP + S+P PP   LR
Sbjct: 155 NNRPVYISQPRPPHPRLR 172


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +2

Query: 236 IIHSNWGLTAAHCTGLRVTIIVRAGAVNLTRPGLLFETTKYINH 367
           +++  W +         V+II+    + L   GLL   ++Y+NH
Sbjct: 394 LLNFGWQMICLIVVIALVSIIMYIAFIILQYAGLLRNRSEYLNH 437



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 697 LTSGLRSVVVAKRANGGGLNGRTEVVGH 614
           L +G  +VV+       G+ GRT  VG+
Sbjct: 131 LITGWSAVVITAAICTSGIVGRTHTVGY 158


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/14 (64%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
 Frame = -3

Query: 591 PFKNTQFKFS-GDE 553
           PFKNT+ KF  G+E
Sbjct: 57  PFKNTEIKFKLGEE 70


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 325  GQVHCSSSDDDCYTQTG 275
            G+ H S  DD  Y QTG
Sbjct: 1610 GKGHGSDKDDVVYQQTG 1626


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 256 AHSCSLHRFACNN 294
           A+ C LHR AC++
Sbjct: 126 ANHCELHRAACHS 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,277
Number of Sequences: 438
Number of extensions: 4640
Number of successful extensions: 33
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)