Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16b02f
         (807 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760...    32   0.47 
12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916           29   4.4  
11_06_0156 + 20748472-20748951                                         29   5.8  
08_02_0590 + 19044193-19044364,19044464-19045047,19045085-190460...    29   5.8  
06_03_1301 - 29159262-29159810,29160360-29160493,29160615-291607...    29   5.8  
10_07_0168 + 13758189-13758418,13758888-13759041,13760576-137610...    28   7.6  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    28   7.6  

>08_01_0786 -
           7606984-7607037,7607235-7607379,7608103-7608163,
           7608273-7608465
          Length = 150

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -1

Query: 306 ERVLVSKEAPQMEVLPFVSAITSPARWG*APALAAEPPTILV 181
           E    +  AP    LPF S + + AR G APAL+A P   LV
Sbjct: 2   EATAAAAAAPARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43


>12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916
          Length = 259

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 424 LDIGGGDPGASGEDVSCAKSEGELTSLGSPG 332
           +++ G D   S    SC  S+G  ++ GSPG
Sbjct: 169 MEVDGNDDSDSSSPTSCVSSDGRSSAGGSPG 199


>11_06_0156 + 20748472-20748951
          Length = 159

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 608 CWLPKQHRRSFRSRQPRPKY 549
           CWLP+  RRS R R  R K+
Sbjct: 6   CWLPRACRRSMRHRSCRTKF 25


>08_02_0590 +
           19044193-19044364,19044464-19045047,19045085-19046059,
           19046219-19046605
          Length = 705

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +2

Query: 203 AANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTLALGTAN 382
           A N GA    A  V+ + +GR S+   +L  +   + AA  WR+RR Q      AL    
Sbjct: 49  AVNGGA----AEDVVVIASGRRSVGEPTLDVSEMLLQAAETWRSRRTQREARPDALPPRP 104

Query: 383 IFS---GGTRVTTSNVQMHGSYNM 445
           + +   GG+   TS  +  G   M
Sbjct: 105 VAADGRGGSGEGTSRARGRGEEGM 128


>06_03_1301 -
           29159262-29159810,29160360-29160493,29160615-29160750,
           29161031-29161347,29161872-29161944
          Length = 402

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
 Frame = -3

Query: 172 VSGFLGASKTLGP----GDTDLVVVVKFDGLFCHDHGRQRHQYCCEDLHGY----YQFTG 17
           + G + A K L P    GD + +  V + G + H +  +   YCCED H      Y   G
Sbjct: 108 IHGAVVAVKQLNPLGHQGDREWLTEVSYLGQYNHPNLVELIGYCCEDDHRLLVYEYMANG 167

Query: 16  SLE 8
           SLE
Sbjct: 168 SLE 170


>10_07_0168 +
           13758189-13758418,13758888-13759041,13760576-13761042,
           13761361-13761478,13761566-13761622,13761906-13762082,
           13762225-13762365,13762458-13762531,13764583-13764738,
           13764822-13764895,13764992-13765068
          Length = 574

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 22/76 (28%), Positives = 32/76 (42%)
 Frame = +2

Query: 242 VIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTLALGTANIFSGGTRVTTSNV 421
           VIA T   + +   S  +NT S  A  C   RR+      +A G A I   G+ +  S+ 
Sbjct: 160 VIAATYVDSMLGARSSTSNTESTAAVSCVPARRSMIE--IMAFGVAKILVRGSNMMKSDG 217

Query: 422 QMHGSYNMDTLHNDVA 469
              G   +  L  +VA
Sbjct: 218 AASGERKIGILAFEVA 233


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 275 RWKFCHSSVRSQVQQDGGEHQRWRQNHPQSW 183
           R +  HS         GG HQR R +HP +W
Sbjct: 543 RHRHGHSHGDHHHHYHGGHHQRRRHHHPPAW 573


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,853,116
Number of Sequences: 37544
Number of extensions: 456959
Number of successful extensions: 2276
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2272
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)