Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16a20r
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   3.4  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        23   7.9  
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    23   7.9  
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    23   7.9  

>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 157 RVCCQLQNGFVERYHVPIYLVLSNC 83
           ++CC L  G  +  H PI  V ++C
Sbjct: 792 KLCCDLYYGSDDYIHSPILQVFASC 816


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 294 RVSVVTCLCGVAPELNQCHFVPGRIQSH-CVSRGSASVGRHL 172
           R+S+V  LC  APEL +   + G+   H   + G   V ++L
Sbjct: 119 RLSIVQLLCDKAPELIRKKDLQGQTPLHRAAAVGKIQVVKYL 160


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = -1

Query: 112 VPIYLVLSNCKFCFNLSI 59
           +PI++ ++  ++CFNLS+
Sbjct: 52  MPIFMDIAFIEYCFNLSL 69


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 227 VGYSPIAFRVGLHPSA 180
           V +SP+A R  LHPS+
Sbjct: 152 VYFSPLALRAHLHPSS 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,351,507
Number of Sequences: 5004
Number of extensions: 26684
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)