Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16a20f
(363 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0013 - 355103-355435 30 0.49
04_03_0119 + 11485753-11486202 30 0.49
01_05_0746 + 24856362-24856710,24856799-24856986 29 1.1
02_02_0123 + 7015905-7015928,7015975-7016105,7017675-7017940,701... 27 3.4
07_03_1031 - 23389263-23389541 27 4.5
03_01_0440 - 3414811-3415884,3416000-3416037,3416807-3416966 27 4.5
02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610... 27 4.5
10_05_0021 + 8118819-8119118 27 6.0
04_04_1646 - 35027475-35027600,35027713-35027826,35027920-350281... 27 6.0
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 27 6.0
02_03_0050 + 14433013-14433303 27 6.0
02_01_0341 + 2444419-2445495 27 6.0
11_06_0602 + 25411159-25411276,25412281-25412384 26 7.9
08_01_0673 - 5805218-5805349,5805936-5806026,5806416-5806471,580... 26 7.9
08_01_0248 - 2048077-2048530,2049015-2049388 26 7.9
05_04_0099 - 17991569-17993014 26 7.9
03_02_0652 - 10188076-10188243,10188353-10188541,10188633-101887... 26 7.9
02_05_0486 - 29423756-29423965,29425424-29425528 26 7.9
>09_01_0013 - 355103-355435
Length = 110
Score = 30.3 bits (65), Expect = 0.49
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Frame = -1
Query: 153 PQRRPRWRP---TDADPRETQWDCIRPGT 76
PQRRPRWRP R W R GT
Sbjct: 45 PQRRPRWRPQRRLGQQRRRATWHSFRQGT 73
>04_03_0119 + 11485753-11486202
Length = 149
Score = 30.3 bits (65), Expect = 0.49
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +1
Query: 28 GDVFVWCSSGTKPVPFCARSDTVPLRFAWVCIRRPPSWSPL 150
G ++ WCSS P P A S L C RR SPL
Sbjct: 69 GGMYPWCSSPASPPPSSATSTCTALSPGTSCCRRCRRVSPL 109
>01_05_0746 + 24856362-24856710,24856799-24856986
Length = 178
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 79 ARSDTVPLRFAWVCIRRPPSW 141
ARSDT P A VC+RR P+W
Sbjct: 84 ARSDTWPC-LAGVCVRRKPAW 103
>02_02_0123 +
7015905-7015928,7015975-7016105,7017675-7017940,
7018239-7018327,7018716-7018811,7018874-7018969,
7019121-7019251,7020123-7020177,7020645-7020800,
7021238-7021306,7021392-7021499,7022128-7022196,
7022743-7022797,7023031-7023227
Length = 513
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 68 CHFVPGR--IQSHCVSRGSASVGRHLGRRWGVFAASYKM 178
C ++P R ++S SRG A+ HL RR A ++M
Sbjct: 106 CRYLPSRCLLRSSRTSRGLAAADLHLARRGEQIRAGWRM 144
>07_03_1031 - 23389263-23389541
Length = 92
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 191 RSTNPFCSWQQTRPSGDQDGG 129
R+ P+CSWQ S D GG
Sbjct: 3 RTCLPWCSWQLAAASADNSGG 23
>03_01_0440 - 3414811-3415884,3416000-3416037,3416807-3416966
Length = 423
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 40 VWCSSGTKPVPFCARSDTVPLRFAWVCIRRPPSWSPLGRVC 162
+W + G +PF R+ + AWV + R P + R+C
Sbjct: 275 MWKNHGQWQLPFSGRAYFIAELDAWVGLSRKPGTTTSWRIC 315
>02_05_0490 +
29456825-29457499,29458771-29459057,29460922-29461039,
29461451-29461972,29462058-29462170,29463033-29463053,
29463726-29463960,29464218-29464381,29464695-29464776,
29465077-29465166,29465625-29465858,29466347-29466418,
29466857-29467000,29467573-29467659,29467940-29468098,
29469216-29469476,29469789-29469836
Length = 1103
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -1
Query: 153 PQRRPRWRPTDADPRETQWDCIRPG 79
P +W P DA R + DC PG
Sbjct: 188 PAEGGQWAPADAAARRLEKDCAEPG 212
>10_05_0021 + 8118819-8119118
Length = 99
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 150 QRRPRWRPTDADPRETQW 97
QRRP W P D DP W
Sbjct: 43 QRRPWWAPPDLDPLGQIW 60
>04_04_1646 -
35027475-35027600,35027713-35027826,35027920-35028106,
35028262-35028379,35028699-35028827,35028947-35028998,
35029525-35029869
Length = 356
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = -1
Query: 129 PTDADPRETQWDCIRPGTKWHWFS--SGATPHK 37
PT PRE +P TKW F+ G T HK
Sbjct: 106 PTTRFPREKHLPRPKPPTKWEQFAKMKGITKHK 138
>04_04_1445 -
33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +3
Query: 108 RVGLHPSAAILVAAGACLLPATKWVCRTVSCTYL 209
R LHP A LVA LL + W C + S L
Sbjct: 55 RPSLHPLPASLVAILPLLLTSRNWQCSSASVAAL 88
>02_03_0050 + 14433013-14433303
Length = 96
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 142 SPLGRVCCQLQNGFVERYHVPIYLVLSNCKF 234
S LGR Q Q G V R H P+Y+ S C++
Sbjct: 19 SSLGRR--QQQQGAVPRGHFPVYVGESRCRY 47
>02_01_0341 + 2444419-2445495
Length = 358
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 43 WCSSGTKPVPFCARSDTVPLRFAW 114
W +G +PFC R++ VP W
Sbjct: 216 WSKAGDWALPFCGRAEYVPEHGLW 239
>11_06_0602 + 25411159-25411276,25412281-25412384
Length = 73
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 79 ARSDTVPLRFAWVCIRRPPSWSPLGRVCCQLQNGFVERYHVPIYLV 216
ARS T+ R A + R + Q ++GFV+++ +P ++V
Sbjct: 21 ARSATLWRRTAMAALGRRRGGGRRSNITAQREDGFVQKFSLPRWIV 66
>08_01_0673 -
5805218-5805349,5805936-5806026,5806416-5806471,
5806571-5806852,5806924-5807057,5807088-5807163,
5807247-5807747,5808454-5809037,5809579-5809597
Length = 624
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 71 GTGLVPELHHTNTSPQKHDD 12
G G V E+ HT PQ+H D
Sbjct: 3 GGGFVNEMRHTGKRPQQHRD 22
>08_01_0248 - 2048077-2048530,2049015-2049388
Length = 275
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 78 CQVGYSPIAFRVGLHPSAAILVAAGACLLPATKWVCRTV 194
CQ+ YS R ++P L AAG + TK+ TV
Sbjct: 236 CQIDYSSCWARYEIYPFYFPLAAAGRATIDMTKYTKVTV 274
>05_04_0099 - 17991569-17993014
Length = 481
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +2
Query: 38 LCGVAPELNQCHFVPGRIQSHCVSRGSASVGRHLG 142
LCGVAPE C G CV S G LG
Sbjct: 150 LCGVAPETAGCARGGGSGDDACVVAASYGAGVALG 184
>03_02_0652 -
10188076-10188243,10188353-10188541,10188633-10188750,
10188841-10189491,10189870-10190033,10190137-10190574
Length = 575
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 104 VSRGSASVGRHLGRR 148
VS G AS+GRHL RR
Sbjct: 9 VSAGEASLGRHLARR 23
>02_05_0486 - 29423756-29423965,29425424-29425528
Length = 104
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +1
Query: 106 FAWVCIRRP-PSWSPLGR 156
FAW+C+R P P SPL R
Sbjct: 83 FAWLCLRLPLPGCSPLER 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,818,017
Number of Sequences: 37544
Number of extensions: 205961
Number of successful extensions: 745
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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