Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16a18f
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 120 1e-27
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 111 6e-25
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 100 1e-21
09_02_0115 + 4413714-4414475 32 0.58
04_03_0839 + 20220909-20222471 29 3.1
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 29 4.1
12_02_0312 + 17395716-17398112 29 5.4
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 28 7.2
05_06_0238 - 26621843-26622457,26622625-26623375,26624372-266244... 28 9.5
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 120 bits (290), Expect = 1e-27
Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 11/225 (4%)
Frame = +1
Query: 85 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 264
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 1 MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
Query: 265 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 444
I+ S LN +R+KVL+ ++D V ++ ++A K+L V + Y LL L+VQ
Sbjct: 61 QVEVRKKIEYSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQ 120
Query: 445 ALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNKIK-KDVVLKVDTENFLSPDT---- 609
L +L EP V +R R+ D VES+L A+ +Y +K + + VD + +L P
Sbjct: 121 GLLRLKEPAVLLRCRKEDHHHVESVLHSAKNEYASKAEVHHPEILVDHDVYLPPSPSSHD 180
Query: 610 -----C-GGIELVAARGRIKISNTLESRLELIAQQLLPEIRNALF 726
C GG+ L + G+I NTL++RLE++ ++ LPEIR LF
Sbjct: 181 SHERFCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPEIRKLLF 225
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 111 bits (267), Expect = 6e-25
Identities = 78/236 (33%), Positives = 122/236 (51%), Gaps = 22/236 (9%)
Frame = +1
Query: 85 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 264
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ +I
Sbjct: 1 MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAK 60
Query: 265 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIV- 441
I+ S LN AR+KVL+ ++ V + ++A K L V KD Y ++L LIV
Sbjct: 61 QVDVGRKIEYSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQ 120
Query: 442 ----------QALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNKIKKDV-VLKVDTE 588
Q+L +L EP+V +R R+ D+ VES+L A+++Y K K ++ + +D +
Sbjct: 121 RKDSEIIDQIQSLLRLREPSVVLRCREADRGHVESVLEAAKKEYAEKAKVNLPKILIDGK 180
Query: 589 NFLSPDT---------C-GGIELVAARGRIKISNTLESRLELIAQQLLPEIRNALF 726
+L P C GG+ + + G+I NTL++R+E+ +Q LPEIR LF
Sbjct: 181 VYLPPPKTARDAHGPFCSGGVVIASQDGKIVCDNTLDARVEISFKQKLPEIRKKLF 236
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 100 bits (239), Expect = 1e-21
Identities = 69/229 (30%), Positives = 114/229 (49%), Gaps = 21/229 (9%)
Frame = +1
Query: 85 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 264
++D DV +Q+K M FI Q F IEK +LV+ ++ +I
Sbjct: 2 MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEK 61
Query: 265 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 444
I+ S LN +RL+VL+ ++D ++L+ A K L + +D +Y LL IVQ
Sbjct: 62 QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQ 121
Query: 445 ----------ALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNK---------IKKDV 567
+L +L EP V +R R+ D+ LVES+L A+ +Y +K + ++V
Sbjct: 122 DKLTKKNPEQSLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNV 181
Query: 568 VLKVDTENFLS--PDTCGGIELVAARGRIKISNTLESRLELIAQQLLPE 708
L ++ + P GG+ L + G+I NTL++RLE++ ++ LPE
Sbjct: 182 YLPPAPSHYEAHGPSCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPE 230
>09_02_0115 + 4413714-4414475
Length = 253
Score = 31.9 bits (69), Expect = 0.58
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 414 LRAAGHTYCAGSLPAHGTHCHHPRPSNRQGSGG 512
LR H+ + SLP H HHPRP +GS G
Sbjct: 20 LRLFSHSSASASLPLLLGHFHHPRPVPPRGSPG 52
>04_03_0839 + 20220909-20222471
Length = 520
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 646 YVPWLQPARYHHRCRATKSSQCRLSTQRPS*SYSCSLVELFRAGTPPEP 500
Y+P+L+P + +A + ++ T P + ++V RAG+PP+P
Sbjct: 231 YLPFLRPFLWRQHRQAVALRREQIDTVLPLINRRRAIVRGMRAGSPPDP 279
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +1
Query: 313 ARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQA 447
+RL++LK R+D++ N LD+A K+ E D + E V +QA
Sbjct: 826 SRLRILKCRDDNI-NSLDDAIKQHVEACTDQPNWDEDGVVAKIQA 869
>12_02_0312 + 17395716-17398112
Length = 798
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 286 IQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 429
++ +N+ N L VLK+ D + + L L+ PKD +++ ELL+
Sbjct: 383 VKETNIPNTDILSVLKLSYDALPSDLRACFASLSTFPKDYEIFRELLI 430
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 432 TYCAGSLPAHGTHCHHPRPSNRQGSGG 512
TYCAG + G H HH ++Q GG
Sbjct: 34 TYCAGGVDDVGHHHHHHVHQHQQQHGG 60
>05_06_0238 -
26621843-26622457,26622625-26623375,26624372-26624418,
26624632-26624740,26624969-26625050,26625164-26625248,
26625320-26625439,26625735-26625800,26625994-26626041,
26626148-26626196,26626576-26626613
Length = 669
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 687 DQLQARLQSVADLDTSPGCNQLDTTTGVGRQKVLSVDFQH 568
++L+ + DL GC+ D+ G+G Q L + QH
Sbjct: 110 EELELTMDQFIDLCILSGCDYCDSIKGIGGQTALKLIRQH 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,290,466
Number of Sequences: 37544
Number of extensions: 398064
Number of successful extensions: 1183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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