Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16a18f
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h at...   189   2e-48
U97593-2|AAY86241.1|  195|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z81071-2|CAB03012.1|  618|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h
           atpase protein 8 protein.
          Length = 226

 Score =  189 bits (460), Expect = 2e-48
 Identities = 100/218 (45%), Positives = 130/218 (59%)
 Frame = +1

Query: 85  LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 264
           +SD DVQKQ++HMMAFIEQ                FNIEKGRLVQQQR KIM        
Sbjct: 3   ISDNDVQKQLRHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRQKIMEFFEKKEK 62

Query: 265 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 444
                  IQ+SN LN  RL+ LK REDH+  VLDEAR  L+ +  D   Y  +L  L++Q
Sbjct: 63  QVELQRKIQASNSLNAGRLRCLKAREDHIGAVLDEARSNLSRISGDAARYPAILKGLVMQ 122

Query: 445 ALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNKIKKDVVLKVDTENFLSPDTCGGIE 624
            L QL+E  V +R R+ D  LVE LL +     + +      + +D +NFL  ++ GG+E
Sbjct: 123 GLLQLLEKEVVLRCREKDLRLVEQLLPECLDGLQKEWGSTTKVVLDKQNFLPSESAGGVE 182

Query: 625 LVAARGRIKISNTLESRLELIAQQLLPEIRNALFRTQP 738
           L A  G+IK+S+TLESRLELIA Q++P++R ALF   P
Sbjct: 183 LSARAGKIKVSSTLESRLELIANQIVPQVRTALFGPNP 220


>U97593-2|AAY86241.1|  195|Caenorhabditis elegans Hypothetical
           protein C46G7.5 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +2

Query: 491 KPTRLWWSPCSEKLNKTTRIRSRRTLC*KSTLRTFCRPT 607
           +P  LW S  S +L +   IRSRRT C     RTF  P+
Sbjct: 85  RPQTLWMST-SPRLRELMSIRSRRTNC-SELCRTFRLPS 121


>Z81071-2|CAB03012.1|  618|Caenorhabditis elegans Hypothetical
           protein F28F8.2 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 370 LHQVHYVRDLHALSVPSDELG 308
           LH++ YV D H + VP D  G
Sbjct: 515 LHKLDYVADAHVVGVPDDRYG 535


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,498,927
Number of Sequences: 27780
Number of extensions: 301836
Number of successful extensions: 927
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)