Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16a15r
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   0.48 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    26   0.53 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    26   0.53 
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    25   1.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    24   2.1  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.8  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   6.5  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect(2) = 0.48
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 683 LNGFELAGRPMKVGNVTER 627
           LNG E AGRP  +   ++R
Sbjct: 318 LNGLEFAGRPQNLQLQSQR 336



 Score = 21.8 bits (44), Expect(2) = 0.48
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -3

Query: 548 LQLMFKLAEGTGLQIPPAAASVLMGSGSALVSPQPQV 438
           + ++  L EGTG  + P     L  +   L+   P+V
Sbjct: 375 MNILGDLIEGTGRSVNPRYYGSLQAAARKLLGNAPEV 411


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 880 PVMDLLDSMLGLYILILQRICYVAFLNHSEKLI 782
           P   L D  L +  +I    CY  FL H+  LI
Sbjct: 346 PPQSLTDMWLTMLSMISGATCYALFLGHATNLI 378


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 880 PVMDLLDSMLGLYILILQRICYVAFLNHSEKLI 782
           P   L D  L +  +I    CY  FL H+  LI
Sbjct: 314 PPQSLTDMWLTMLSMISGATCYALFLGHATNLI 346


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 812 GIFEPFGKIDHIQLMTDPETGKSK 741
           G+F  FG I H++L +D   G+ K
Sbjct: 61  GLFYEFGLITHVKLSSDWYMGQGK 84


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -3

Query: 293 DKASPQGNVYCKC 255
           D AS  GNVYCKC
Sbjct: 97  DSAS-SGNVYCKC 108


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 123 ECSHRVRE*RMIIDERYIRRRNNTTRKPSSVQTVHGGNG 239
           E  H V + ++  ++R++RRR       + +  +HG +G
Sbjct: 104 ERKHAVHKEQLSREQRFLRRRLEQLTNQTGLHGLHGLHG 142


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -1

Query: 421 HNASCSITCLIQQRK 377
           ++++C+I CL Q+RK
Sbjct: 77  NHSACAIRCLAQRRK 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,292
Number of Sequences: 438
Number of extensions: 5741
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)