Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16a15f
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0678 - 5534879-5534883,5535430-5535529,5535638-5535799,553...    29   5.3  
06_03_0706 + 23719392-23719641,23720337-23720383,23720988-237210...    29   5.3  
05_05_0051 + 21923402-21923763,21923861-21923951,21924048-219241...    28   9.3  

>11_01_0678 -
           5534879-5534883,5535430-5535529,5535638-5535799,
           5536000-5536966,5537444-5537561,5538682-5538871,
           5538952-5539107,5539296-5540315
          Length = 905

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = -2

Query: 759 FLCAYLSACPIDALMRKCYPVTQSTR*KQRHSNTRRVNK*NCISKFVIVIWQTFVVFQLW 580
           F C    A  I +   KC  +   T    + S TR ++  N IS  +   W    VF++ 
Sbjct: 697 FFCDLSDAKKITSQSMKCLNIRHCTF--SQISRTR-ISAPNLISLRLENYWHRTPVFEVM 753

Query: 579 PLIVQT*MKHHKL--HWFTC 526
           PLIV   ++ H     W++C
Sbjct: 754 PLIVDAFVRVHDRSGDWYSC 773


>06_03_0706 +
           23719392-23719641,23720337-23720383,23720988-23721060,
           23721323-23721540,23721868-23722170,23722322-23722399,
           23723064-23723549,23723875-23724312
          Length = 630

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 433 GLFNGKSRLGYQATTD*LP*TSNTSQSKHPRTSKPMQFVMFHL 561
           G     S LG+ +  D +P + + + S HP++SK    ++ HL
Sbjct: 383 GTTESGSSLGFVSMVDNMPHSKSAALSVHPKSSKTAHKILQHL 425


>05_05_0051 +
           21923402-21923763,21923861-21923951,21924048-21924196,
           21924279-21924522,21924664-21924768,21924842-21925024,
           21925118-21925319,21925896-21926372,21926680-21926771,
           21927265-21927444
          Length = 694

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 599 LWYFNYGL*LFRHR*NITNCIGLLVLGCF 513
           L+ F YGL +FR R  I N IG  ++G F
Sbjct: 593 LFPFGYGLKMFRGRSTINNRIGQAMIGPF 621


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,768,143
Number of Sequences: 37544
Number of extensions: 317604
Number of successful extensions: 545
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)