Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16a15f
         (763 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10911-1|AAA16347.1|  530|Homo sapiens splicing factor protein.        33   1.1  
L10910-1|AAA16346.1|  524|Homo sapiens splicing factor protein.        33   1.1  
BC141835-1|AAI41836.1|  530|Homo sapiens RNA binding motif prote...    33   1.1  
BC131543-1|AAI31544.1|  508|Homo sapiens RBM39 protein protein.        33   1.1  
AL357374-12|CAI13607.1|  193|Homo sapiens RNA binding motif prot...    33   1.1  
AL357374-11|CAI13608.1|  202|Homo sapiens RNA binding motif prot...    33   1.1  
AL357374-10|CAI13606.1|  231|Homo sapiens RNA binding motif prot...    33   1.1  
AL357374-9|CAC11119.1|  524|Homo sapiens RNA binding motif prote...    33   1.1  
AL357374-8|CAC11118.1|  530|Homo sapiens RNA binding motif prote...    33   1.1  

>L10911-1|AAA16347.1|  530|Homo sapiens splicing factor protein.
          Length = 530

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +2

Query: 137 MAEDFDVEAMLEAPYNK 187
           MA+D D+EAMLEAPY K
Sbjct: 1   MADDIDIEAMLEAPYKK 17


>L10910-1|AAA16346.1|  524|Homo sapiens splicing factor protein.
          Length = 524

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +2

Query: 137 MAEDFDVEAMLEAPYNK 187
           MA+D D+EAMLEAPY K
Sbjct: 1   MADDIDIEAMLEAPYKK 17


>BC141835-1|AAI41836.1|  530|Homo sapiens RNA binding motif protein
           39 protein.
          Length = 530

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +2

Query: 137 MAEDFDVEAMLEAPYNK 187
           MA+D D+EAMLEAPY K
Sbjct: 1   MADDIDIEAMLEAPYKK 17


>BC131543-1|AAI31544.1|  508|Homo sapiens RBM39 protein protein.
          Length = 508

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +2

Query: 137 MAEDFDVEAMLEAPYNK 187
           MA+D D+EAMLEAPY K
Sbjct: 1   MADDIDIEAMLEAPYKK 17


>AL357374-12|CAI13607.1|  193|Homo sapiens RNA binding motif protein
           39 protein.
          Length = 193

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +2

Query: 137 MAEDFDVEAMLEAPYNK 187
           MA+D D+EAMLEAPY K
Sbjct: 1   MADDIDIEAMLEAPYKK 17


>AL357374-11|CAI13608.1|  202|Homo sapiens RNA binding motif protein
           39 protein.
          Length = 202

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +2

Query: 137 MAEDFDVEAMLEAPYNK 187
           MA+D D+EAMLEAPY K
Sbjct: 1   MADDIDIEAMLEAPYKK 17


>AL357374-10|CAI13606.1|  231|Homo sapiens RNA binding motif protein
           39 protein.
          Length = 231

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +2

Query: 137 MAEDFDVEAMLEAPYNK 187
           MA+D D+EAMLEAPY K
Sbjct: 1   MADDIDIEAMLEAPYKK 17


>AL357374-9|CAC11119.1|  524|Homo sapiens RNA binding motif protein
           39 protein.
          Length = 524

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +2

Query: 137 MAEDFDVEAMLEAPYNK 187
           MA+D D+EAMLEAPY K
Sbjct: 1   MADDIDIEAMLEAPYKK 17


>AL357374-8|CAC11118.1|  530|Homo sapiens RNA binding motif protein
           39 protein.
          Length = 530

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +2

Query: 137 MAEDFDVEAMLEAPYNK 187
           MA+D D+EAMLEAPY K
Sbjct: 1   MADDIDIEAMLEAPYKK 17


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,360,134
Number of Sequences: 237096
Number of extensions: 1818414
Number of successful extensions: 3113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3113
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9144232952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)