Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16a11r
         (914 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   5.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.8  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   8.9  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 754 ARDEKFFNERSSKTLTRN*SYLHVLNYVYYINIIS 650
           +++ K  +  S+KT+  N +Y +    +YY NII+
Sbjct: 309 SKESKIISSLSNKTIHNNNNYKNYNKKLYY-NIIN 342


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 597 KTNKYFLKRFKIELLVKPRFKYCKVSVEMLC 505
           KTN       K++LL K  F Y  + + + C
Sbjct: 222 KTNTGEYSCLKVDLLFKREFSYYLIQIYIPC 252


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 597 KTNKYFLKRFKIELLVKPRFKYCKVSVEMLC 505
           KTN       K++LL K  F Y  + + + C
Sbjct: 222 KTNTGEYSCLKVDLLFKREFSYYLIQIYIPC 252


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 754 ARDEKFFNERSSKTLTRN*SYLHVLNYVYYINI 656
           +++ K  +  S+KT+  N +Y +  N   Y NI
Sbjct: 298 SKEPKIISSLSNKTIHNNNNYNNYNNKKLYYNI 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,177
Number of Sequences: 438
Number of extensions: 3507
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)