Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16a08r
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...   276   2e-75
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...   246   3e-66
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1...    29   1.0  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   2.4  
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    26   7.3  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    26   7.3  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   9.7  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   9.7  

>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score =  276 bits (677), Expect = 2e-75
 Identities = 128/200 (64%), Positives = 156/200 (78%)
 Frame = -2

Query: 812 IQDAIQKAGYAGKIDIGMDVAASEFFKDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFIK 633
           I +AI KAGY GKI IG+DVA+SEF+ DGKYDLD K     P + L+  +L D+Y++  K
Sbjct: 228 IVEAINKAGYEGKIKIGLDVASSEFYVDGKYDLDIKAAKPKPENKLTYQQLTDLYVELSK 287

Query: 632 DFPMVSIEDPFDQDDWSAWANLTGRTPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVN 453
            +P+VSIEDPFDQDDWSAW ++   T  QIVGDDLTVTN KR+ TA++KK  N LLLKVN
Sbjct: 288 KYPIVSIEDPFDQDDWSAWTHMKAETDFQIVGDDLTVTNVKRLRTAIDKKCANALLLKVN 347

Query: 452 QIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLA 273
           QIGSVTES++A  ++ + GWG MVSHRSGET DTFI+ L VG+  GQ+K+GAPCRSERLA
Sbjct: 348 QIGSVTESLNAVRMSYEAGWGVMVSHRSGETADTFISHLTVGIGAGQLKSGAPCRSERLA 407

Query: 272 KYNQILRIEEELGVNAKYAG 213
           KYN++LRIEEELG    YAG
Sbjct: 408 KYNELLRIEEELGSEGVYAG 427


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score =  246 bits (602), Expect = 3e-66
 Identities = 112/200 (56%), Positives = 152/200 (76%)
 Frame = -2

Query: 812 IQDAIQKAGYAGKIDIGMDVAASEFFKDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFIK 633
           + +AI++AGY GK+ IG DVAASE +    YDLDFK+    P + L   KL + Y   I+
Sbjct: 229 VNEAIKEAGYDGKVKIGFDVAASELYNGKLYDLDFKSEHPKPENKLDYKKLYEKYSALIE 288

Query: 632 DFPMVSIEDPFDQDDWSAWANLTGRTPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVN 453
            +P+V IEDPF ++DW A++ ++ +T ++++ DDLTVTN KR++ A+E K  N LL+K+N
Sbjct: 289 KYPIVFIEDPFSEEDWGAFSYMSSKTKVEVIADDLTVTNVKRLSKAIELKCANALLVKIN 348

Query: 452 QIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLA 273
           QIGS++E+IDA  +AKK GWG MVSHRSGET+D+FIA L VGL  GQ+K+GAPCRSERLA
Sbjct: 349 QIGSLSETIDAANMAKKAGWGLMVSHRSGETDDSFIAHLAVGLEAGQMKSGAPCRSERLA 408

Query: 272 KYNQILRIEEELGVNAKYAG 213
           KYN++LRIE+ LG +A YAG
Sbjct: 409 KYNELLRIEDNLGDSAIYAG 428


>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 415

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = -2

Query: 506 IATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVG 327
           I  A+ +K CN +L + + IG VT    AH+   K   GT++    G T+   ++ L+ G
Sbjct: 40  IDEAIFEKNCNRMLDRASDIG-VT--FRAHVKTHKTIEGTLLQLGDGRTKAVVVSTLMEG 96

Query: 326 LS 321
            S
Sbjct: 97  FS 98


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 159  TEFYVFLREFLDRSTEVLP--GVFGVDAKFLFNAQNLVV-LGETLRATRGAGLD 311
            + FY  + E   RS+EVLP      +DAK    A+ +++    T  A  GA LD
Sbjct: 1630 SSFYSLIHESFSRSSEVLPTSSDTNLDAKRAEEAEMIMIETPPTAEANTGAKLD 1683


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 321 HGSD-QDRRPVSLGASRQVQPNSAH*RGTWRQ 229
           +GSD   RRP  LG  ++V  +    +G+WR+
Sbjct: 52  YGSDITPRRPKQLGLPKEVNTSECIDQGSWRK 83


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 327 FVHGS-DQDRRPVSLGASRQVQPN 259
           FV GS +Q+RRP+S      +QPN
Sbjct: 519 FVQGSGNQNRRPISFPVISNMQPN 542


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 15/54 (27%)
 Frame = -2

Query: 701 PDSNPG-----DYLSSDKLADVYLDFIKDFPM------VSIE----DPFDQDDW 585
           P+++PG     D L SD+LA++YL   K   M      VS++    +P D D W
Sbjct: 154 PETDPGNMETTDPLFSDELAEIYLSIHKCMDMRHKYIRVSLQGELDNPIDDDSW 207


>SPAC1565.07c |||TATA binding protein interacting protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -2

Query: 779  GKIDIG-MDVAASEFFKDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIEDP 603
            G++D G + + A+E+F     +L+  N D      ++   L      FIK+   + + D 
Sbjct: 841  GQLDYGKLTLPANEYFDTIASNLNSPNADVMKAAAIALGSLTSQSEKFIKELCALYVSDA 900

Query: 602  FDQD 591
            +D++
Sbjct: 901  YDKE 904


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,389,442
Number of Sequences: 5004
Number of extensions: 70577
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)