Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16a08r
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 291 6e-79
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 286 2e-77
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 230 9e-61
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 215 3e-56
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 200 1e-51
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621... 29 5.8
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 291 bits (713), Expect = 6e-79
Identities = 144/212 (67%), Positives = 168/212 (79%), Gaps = 5/212 (2%)
Frame = -2
Query: 812 IQDAIQKAGYAGKIDIGMDVAASEFF--KDGKYDLDFKNPDSNPGDY-LSSDKLADVYLD 642
++ AI KAGY GK+ IGMDVAASEF+ KD YDL+FK D+N G + +S D L DVY
Sbjct: 262 LKAAIAKAGYTGKVVIGMDVAASEFYSEKDKTYDLNFKE-DNNDGSHKISGDSLKDVYKS 320
Query: 641 FIKDFPMVSIEDPFDQDDWSAWANLTGRT--PIQIVGDDLTVTNPKRIATAVEKKACNCL 468
F+ ++P+VSIEDPFDQDDW+ +A LT +QIVGDDL VTNP R+A A+ +K CN L
Sbjct: 321 FVSEYPIVSIEDPFDQDDWATYAKLTDEIGQQVQIVGDDLLVTNPTRVAKAISEKTCNAL 380
Query: 467 LLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCR 288
LLKVNQIGSVTESI+A ++K+ GWG M SHRSGETEDTFIADL VGLSTGQIKTGAPCR
Sbjct: 381 LLKVNQIGSVTESIEAVRMSKRAGWGVMASHRSGETEDTFIADLSVGLSTGQIKTGAPCR 440
Query: 287 SERLAKYNQILRIEEELGVNAKYAGKNFRRPV 192
SERLAKYNQ+LRIEEELG A YAG+ FR PV
Sbjct: 441 SERLAKYNQLLRIEEELGDAAVYAGEKFRAPV 472
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 286 bits (701), Expect = 2e-77
Identities = 136/187 (72%), Positives = 156/187 (83%), Gaps = 1/187 (0%)
Frame = -2
Query: 812 IQDAIQKAGYAGKIDIGMDVAASEFF-KDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFI 636
+ DAI+KAGY+GKI IGMDVAASEF KDG YDL+FKN ++ LS+ +L D+Y +F+
Sbjct: 274 LMDAIEKAGYSGKIKIGMDVAASEFLTKDGSYDLNFKNQPNDGAHVLSAQRLCDLYKEFV 333
Query: 635 KDFPMVSIEDPFDQDDWSAWANLTGRTPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKV 456
KDFP+VSIEDPFDQDDWS+WA+L IQIVGDDL VTNPKRIA A+ KKACN LLLKV
Sbjct: 334 KDFPIVSIEDPFDQDDWSSWASLQSSVNIQIVGDDLLVTNPKRIAEAIGKKACNALLLKV 393
Query: 455 NQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRSERL 276
NQIG+VTESI A L +K GWG MVSHRSGETED FIADL VGL++GQIKTGAPCRSERL
Sbjct: 394 NQIGTVTESIQAALDSKAAGWGVMVSHRSGETEDNFIADLAVGLASGQIKTGAPCRSERL 453
Query: 275 AKYNQIL 255
AKYNQI+
Sbjct: 454 AKYNQIV 460
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 230 bits (563), Expect = 9e-61
Identities = 119/211 (56%), Positives = 148/211 (70%), Gaps = 4/211 (1%)
Frame = -2
Query: 812 IQDAIQKAGYAGKIDIGMDVAASEFF--KDGKYDLDFKNPDSNPGDYLSSDKLADVYLDF 639
++ AI+KAGY GK+ IGMDVAASEF+ KD YDL+FK +++ +S D L +VY F
Sbjct: 234 LKTAIEKAGYTGKVVIGMDVAASEFYNDKDKTYDLNFKEENNDGSQKISGDSLKNVYKSF 293
Query: 638 IKDFPMVSIEDPFDQDDWSAWANLTGRT--PIQIVGDDLTVTNPKRIATAVEKKACNCLL 465
+ ++P+VSIEDPFDQDDW +A +T +QIVGDDL VTNP R+A A+++K+CN LL
Sbjct: 294 VSEYPIVSIEDPFDQDDWEHYAKMTAEIGEQVQIVGDDLLVTNPTRVAKAIQEKSCNALL 353
Query: 464 LKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRS 285
LKVNQIGSVTESI+A ++K+ GWG M SHRSGETEDTFIADL VGL+T
Sbjct: 354 LKVNQIGSVTESIEAVKMSKRAGWGVMTSHRSGETEDTFIADLAVGLAT----------- 402
Query: 284 ERLAKYNQILRIEEELGVNAKYAGKNFRRPV 192
+LRIEEELG A YAG FR PV
Sbjct: 403 --------LLRIEEELGAAAVYAGAKFRAPV 425
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 215 bits (525), Expect = 3e-56
Identities = 120/224 (53%), Positives = 148/224 (66%), Gaps = 17/224 (7%)
Frame = -2
Query: 812 IQDAIQKAGYAGKIDIGMDVAASEFF-KDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFI 636
++ AI+KAGY GK+ IGMDVAASEF+ +D YDL+FK +++ +S D L +VY F+
Sbjct: 199 LKTAIEKAGYTGKVVIGMDVAASEFYTEDQTYDLNFKEENNDGSQKISGDSLKNVYKSFV 258
Query: 635 KDFPMVSIEDPFDQDDWSAWANLTGRT--PIQIVGDDLTVTNP--------------KRI 504
++P+VSIEDPFDQDDW +A +T +QIVGDDL VTNP +R+
Sbjct: 259 SEYPIVSIEDPFDQDDWVHYAKMTEEIGDQVQIVGDDLLVTNPTFPCWLQYSNQFDLQRV 318
Query: 503 ATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGL 324
A A++ KACN LLLKVNQIGSVTESI+A ++K+ GWG M SHRSGETEDTFIADL VGL
Sbjct: 319 AKAIKDKACNALLLKVNQIGSVTESIEAVKMSKRAGWGVMTSHRSGETEDTFIADLAVGL 378
Query: 323 STGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFRRPV 192
ST +LRIEEELG A YAG FR PV
Sbjct: 379 ST-------------------LLRIEEELGAAAVYAGAKFRAPV 403
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 200 bits (488), Expect = 1e-51
Identities = 91/175 (52%), Positives = 124/175 (70%)
Frame = -2
Query: 725 KYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIEDPFDQDDWSAWANLTGRTPIQ 546
KYD++FK + + + ++D L ++Y ++P+VSIE PFD+DDW T Q
Sbjct: 305 KYDMEFKFAEKSGQGFKTADDLIEIYSQLCSEYPLVSIEQPFDKDDWEHSKKFTTLELCQ 364
Query: 545 IVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSG 366
+VGDDL +++P+RI AV + CN L+LK NQ+G+VTE+I+ AK WG MVSHRSG
Sbjct: 365 VVGDDLLMSDPERIKRAVNEYTCNALVLKANQVGTVTEAIEVVRQAKDAHWGVMVSHRSG 424
Query: 365 ETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFR 201
+T+D+FIADL VG + GQIK GAPCR E L+KYNQ+LRIEEELG + YAG+N+R
Sbjct: 425 DTDDSFIADLAVGAAAGQIKAGAPCRGECLSKYNQLLRIEEELGSDGVYAGENWR 479
>04_04_1032 -
30259180-30260519,30260650-30260720,30261099-30262118,
30263886-30264121
Length = 888
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -3
Query: 253 ALKRNLASTPNTPGRTSVDRSKNSLKKT*NSVFLSYPHFDSNKKSSIDY 107
ALKR + T G S+DRS +SLK + V S P+ +S SS Y
Sbjct: 515 ALKRPMGKTD---GNISLDRSNSSLKGSLYRVNESNPNMESTGASSHQY 560
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,984,075
Number of Sequences: 37544
Number of extensions: 470931
Number of successful extensions: 1166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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