Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16a08f
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 291 6e-79
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 267 6e-72
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 244 5e-65
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 132 2e-50
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 192 4e-49
07_03_1168 + 24483490-24483553,24483874-24484328 30 2.5
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638... 29 4.3
07_03_1556 + 27692770-27694119 29 5.7
01_01_0796 + 6190931-6192745 29 5.7
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 291 bits (713), Expect = 6e-79
Identities = 144/221 (65%), Positives = 172/221 (77%), Gaps = 1/221 (0%)
Frame = +3
Query: 123 VIKSIKARQIFDSRGNPTVEVDLVTELG-LFRAAVPSGASTGVHEALELRDNIKSEYHGK 299
V++SI+ARQI DSRGNPTVEVDLV G L R+AVPSGASTG++EALELRD + Y GK
Sbjct: 50 VVRSIRARQIVDSRGNPTVEVDLVAGDGRLHRSAVPSGASTGIYEALELRDGDGAAYGGK 109
Query: 300 GVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXX 479
GVL A++NINE+IAP+L ++V Q ++D +ML +DGT NKSKLGANAILGVSL
Sbjct: 110 GVLNAVRNINEVIAPKLV--GVDVRNQSDVDAIMLDIDGTPNKSKLGANAILGVSLSVCR 167
Query: 480 XXXXXXNVPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGASTFSE 659
VPLYKH+ +LAG ++V+PVPAFNVINGGSHAGN LAMQEFM+ P GAS+FSE
Sbjct: 168 AGAGAKEVPLYKHIQELAGTKELVMPVPAFNVINGGSHAGNNLAMQEFMLLPVGASSFSE 227
Query: 660 AMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPTYKTTR 782
A+RMGSEVYH LK IIK K+G D+ VGDEGGFAP + R
Sbjct: 228 ALRMGSEVYHALKGIIKAKYGQDACNVGDEGGFAPNVQDNR 268
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 267 bits (655), Expect = 6e-72
Identities = 142/227 (62%), Positives = 169/227 (74%), Gaps = 8/227 (3%)
Frame = +3
Query: 126 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKG 302
I S+KARQIFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALELRD S+Y GKG
Sbjct: 5 IVSVKARQIFDSRGNPTVEVDVCCSDGTFARAAVPSGASTGVYEALELRDG-GSDYLGKG 63
Query: 303 VLTAIKNINELIAPELTKANLEVTQQREIDELMLK-LDGTEN-----KSKLGANAILGVS 464
V A+ N+N +IAP L + T Q E+D M++ LDGT+N K KLGANAIL VS
Sbjct: 64 VSKAVDNVNSVIAPALI--GKDPTSQAELDNFMVQQLDGTKNEWGWCKQKLGANAILAVS 121
Query: 465 LXXXXXXXXXXNVPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQ-EFMIFPTG 641
L +PLY+H+A+LAGN +VLPVPAFNVINGGSHAGNKLAMQ EFMI PTG
Sbjct: 122 LAICKAGAIIKKIPLYQHIANLAGNKQLVLPVPAFNVINGGSHAGNKLAMQAEFMILPTG 181
Query: 642 ASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPTYKTTR 782
A++F EAM+MG EVYH+LK +IK+K+G D+T VGDEGGFAP + +
Sbjct: 182 AASFKEAMKMGVEVYHNLKSVIKKKYGQDATNVGDEGGFAPNIQENK 228
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 244 bits (598), Expect = 5e-65
Identities = 143/259 (55%), Positives = 171/259 (66%), Gaps = 36/259 (13%)
Frame = +3
Query: 114 LKMVIKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEY 290
+ + I+S+KARQIFDSRGNPTVEVD+ G F R AVPSGASTG++EALELRD S+Y
Sbjct: 1 MAVTIQSVKARQIFDSRGNPTVEVDVGLSDGSFARGAVPSGASTGIYEALELRDG-GSDY 59
Query: 291 HGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLK-LDGTEN-----KSKLGANAI 452
GKGVL A+ N+N +I P L + T+Q +ID M++ LDGT N K KLGANAI
Sbjct: 60 LGKGVLKAVSNVNTIIGPALI--GKDPTEQVDIDNFMVQQLDGTSNNWGWCKQKLGANAI 117
Query: 453 LGVSLXXXXXXXXXXNVPLYK---HLADLAGNNDIVLPVPAFNVINGGSHAGNKLAM--- 614
L VSL +PLY+ H+A+LAGN +VLPVPAFNVINGGSHAGNKLAM
Sbjct: 118 LAVSLAVCKAGAMVKKIPLYQKLQHIANLAGNKTLVLPVPAFNVINGGSHAGNKLAMQVK 177
Query: 615 -----------------------QEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGL 725
QEFMI PTGAS+F EAM+MG EVYHHLK IIK+K+G
Sbjct: 178 YCLNNKTMSMHDSVIFSAHLAAVQEFMILPTGASSFKEAMKMGVEVYHHLKSIIKKKYGQ 237
Query: 726 DSTAVGDEGGFAPTYKTTR 782
D+T VGDEGGFAP + +
Sbjct: 238 DATNVGDEGGFAPNIQENK 256
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 132 bits (319), Expect(2) = 2e-50
Identities = 78/137 (56%), Positives = 93/137 (67%), Gaps = 7/137 (5%)
Frame = +3
Query: 126 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKG 302
I+S+KARQIFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALELRD S+Y GKG
Sbjct: 5 IQSVKARQIFDSRGNPTVEVDICCSDGTFARAAVPSGASTGVYEALELRDG-GSDYLGKG 63
Query: 303 VLTAIKNINELIAPELTKANLEVTQQREIDELML-KLDGTEN-----KSKLGANAILGVS 464
VL A+ N+N +I P L + T+Q ID M+ +LDGT+N K KLGANAIL VS
Sbjct: 64 VLKAVDNVNSIIGPAL--IGKDPTEQTVIDNFMVQQLDGTKNEWGWCKQKLGANAILAVS 121
Query: 465 LXXXXXXXXXXNVPLYK 515
L +PLY+
Sbjct: 122 LALCKAGAIIKKIPLYQ 138
Score = 85.8 bits (203), Expect(2) = 2e-50
Identities = 37/56 (66%), Positives = 46/56 (82%)
Frame = +3
Query: 615 QEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPTYKTTR 782
QEFMI PTGAS+F EAM+MG EVYH+LK +IK+K+G D+T VGDEGGFAP + +
Sbjct: 138 QEFMILPTGASSFKEAMKMGVEVYHNLKSVIKKKYGQDATNVGDEGGFAPNIQENK 193
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 192 bits (467), Expect = 4e-49
Identities = 98/228 (42%), Positives = 141/228 (61%)
Frame = +3
Query: 81 ISLNLRKSSSVLKMVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEAL 260
IS ++R+++ VI S++ARQI D RG P VEV L T + RA+ + + A
Sbjct: 35 ISNHMRRAAPA---VITSVRARQILDGRGEPAVEVSLHTNKAVHRASAAAADAPEGAAAD 91
Query: 261 ELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLG 440
+RD K + + V A++ IN+ ++ L ++ QQ +ID+ ++ LD +K+++G
Sbjct: 92 AVRDAEKRKLLARAVADAVRVINDKVSEALV--GMDPQQQSQIDQAIMDLDKAHHKAEIG 149
Query: 441 ANAILGVSLXXXXXXXXXXNVPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQE 620
N++L VS+ VPLYKH+A+L G + LP+PA VINGG+HAGN L +QE
Sbjct: 150 VNSMLAVSIAACKAGAAEKEVPLYKHIAELVGKSATTLPIPAITVINGGTHAGNSLPIQE 209
Query: 621 FMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAP 764
MI P GA F EAM+MGSE YHHLK II EK+G +S +GD+GGFAP
Sbjct: 210 IMILPVGAKNFEEAMQMGSETYHHLKDIILEKYGSNSCNIGDDGGFAP 257
>07_03_1168 + 24483490-24483553,24483874-24484328
Length = 172
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +3
Query: 633 PTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPTYKTTRMLF 791
P+GA E + +G+ V H K I++ K LDS D+ Y TT+M+F
Sbjct: 36 PSGAVHLVEGVAIGALVQRHFKGILRVK-TLDSLG-SDDIVVLSVYTTTKMVF 86
>07_03_0627 - 20061951-20062391,20062912-20062960,20063386-20063851,
20063933-20064139,20064267-20064405,20065146-20065282,
20065414-20065657,20065808-20065969,20066049-20066167,
20066240-20066314,20066327-20066500,20066607-20066769,
20067211-20067420,20067515-20067668,20067761-20067839,
20067999-20068146,20068501-20068671,20068771-20069385
Length = 1250
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 204 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPE 347
GL +A + SGA + A+E D+ YHG V +++N +IA +
Sbjct: 1124 GLVKAFMDSGAKAVISSAMEPPDSQSIVYHGMEVNGSLENGKFVIADD 1171
>07_03_1556 + 27692770-27694119
Length = 449
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +3
Query: 636 TGASTFSEA----MRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPTYKTT 779
TGA T ++ R+ + VY L+ ++ + G + AV GGF Y TT
Sbjct: 319 TGAGTVLDSGTMFTRLVAPVYLALRDEVRRRVGAGAAAVSSLGGFDTCYNTT 370
>01_01_0796 + 6190931-6192745
Length = 604
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/75 (22%), Positives = 36/75 (48%)
Frame = +3
Query: 204 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQR 383
GLF+ A TG A+ + D +S++H G T ++ ++ ++ +A E
Sbjct: 29 GLFKCASDLSILTGASVAVVIEDQNRSKFHAVGTPTVQAVVDAALSSDVEEAAAEARPVA 88
Query: 384 EIDELMLKLDGTENK 428
+ ++LM ++ E +
Sbjct: 89 D-EQLMERIAPLERE 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,887,413
Number of Sequences: 37544
Number of extensions: 437938
Number of successful extensions: 1013
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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