Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16a08f
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68318-8|CAH10783.1|  465|Caenorhabditis elegans Hypothetical pr...   313   1e-85
Z68318-2|CAA92692.1|  434|Caenorhabditis elegans Hypothetical pr...   312   2e-85
Z68318-3|CAD57704.1|  337|Caenorhabditis elegans Hypothetical pr...   179   2e-45
Z75542-4|CAA99861.1|  424|Caenorhabditis elegans Hypothetical pr...    31   1.3  
EF601082-1|ABQ96204.1|  370|Caenorhabditis elegans UNC-55a isofo...    31   1.3  
EF601077-1|ABQ96199.1|  357|Caenorhabditis elegans UNC-55b isofo...    31   1.3  
U56864-1|AAB04059.1|  355|Caenorhabditis elegans EGL-30 protein.       28   6.8  
AY008139-1|AAG32092.1|  355|Caenorhabditis elegans heterotrimeri...    28   6.8  
AF003739-2|AAM15593.1|  303|Caenorhabditis elegans Egg laying de...    28   6.8  
AF003739-1|AAB58071.1|  355|Caenorhabditis elegans Egg laying de...    28   6.8  

>Z68318-8|CAH10783.1|  465|Caenorhabditis elegans Hypothetical
           protein T21B10.2c protein.
          Length = 465

 Score =  313 bits (768), Expect = 1e-85
 Identities = 151/222 (68%), Positives = 176/222 (79%)
 Frame = +3

Query: 117 KMVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHG 296
           +M I  I ARQI+DSRGNPTVEVDL TE G+FRAAVPSGASTGVHEALELRD  K+ + G
Sbjct: 31  RMPITKIHARQIYDSRGNPTVEVDLFTEKGVFRAAVPSGASTGVHEALELRDGDKAVHLG 90

Query: 297 KGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXX 476
           KGVL A+ NINE IAP L     +VT Q++ID+ M+ LDG+ENK  LGANAILGVSL   
Sbjct: 91  KGVLKAVSNINEKIAPALIAKGFDVTAQKDIDDFMMALDGSENKGNLGANAILGVSLAVA 150

Query: 477 XXXXXXXNVPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGASTFS 656
                   +PLYK++A+LAG   +VLPVPAFNVINGGSHAGNKLAMQEFMI P GAS+F+
Sbjct: 151 KAGAVHKGLPLYKYIAELAGTGKVVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFA 210

Query: 657 EAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPTYKTTR 782
           EAMRMGSEVYHHLK  IK+++GLD+TAVGDEGGFAP  +  +
Sbjct: 211 EAMRMGSEVYHHLKAEIKKRYGLDATAVGDEGGFAPNIQDNK 252


>Z68318-2|CAA92692.1|  434|Caenorhabditis elegans Hypothetical
           protein T21B10.2a protein.
          Length = 434

 Score =  312 bits (766), Expect = 2e-85
 Identities = 151/221 (68%), Positives = 175/221 (79%)
 Frame = +3

Query: 120 MVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGK 299
           M I  I ARQI+DSRGNPTVEVDL TE G+FRAAVPSGASTGVHEALELRD  K+ + GK
Sbjct: 1   MPITKIHARQIYDSRGNPTVEVDLFTEKGVFRAAVPSGASTGVHEALELRDGDKAVHLGK 60

Query: 300 GVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXX 479
           GVL A+ NINE IAP L     +VT Q++ID+ M+ LDG+ENK  LGANAILGVSL    
Sbjct: 61  GVLKAVSNINEKIAPALIAKGFDVTAQKDIDDFMMALDGSENKGNLGANAILGVSLAVAK 120

Query: 480 XXXXXXNVPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGASTFSE 659
                  +PLYK++A+LAG   +VLPVPAFNVINGGSHAGNKLAMQEFMI P GAS+F+E
Sbjct: 121 AGAVHKGLPLYKYIAELAGTGKVVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFAE 180

Query: 660 AMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPTYKTTR 782
           AMRMGSEVYHHLK  IK+++GLD+TAVGDEGGFAP  +  +
Sbjct: 181 AMRMGSEVYHHLKAEIKKRYGLDATAVGDEGGFAPNIQDNK 221


>Z68318-3|CAD57704.1|  337|Caenorhabditis elegans Hypothetical
           protein T21B10.2b protein.
          Length = 337

 Score =  179 bits (436), Expect = 2e-45
 Identities = 90/143 (62%), Positives = 105/143 (73%)
 Frame = +3

Query: 120 MVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGK 299
           M I  I ARQI+DSRGNPTVEVDL TE G+FRAAVPSGASTGVHEALELRD  K+ + GK
Sbjct: 1   MPITKIHARQIYDSRGNPTVEVDLFTEKGVFRAAVPSGASTGVHEALELRDGDKAVHLGK 60

Query: 300 GVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXX 479
           GVL A+ NINE IAP L     +VT Q++ID+ M+ LDG+ENK  LGANAILGVSL    
Sbjct: 61  GVLKAVSNINEKIAPALIAKGFDVTAQKDIDDFMMALDGSENKGNLGANAILGVSLAVAK 120

Query: 480 XXXXXXNVPLYKHLADLAGNNDI 548
                  +PLYK++A+LAG   I
Sbjct: 121 AGAVHKGLPLYKYIAELAGTGKI 143


>Z75542-4|CAA99861.1|  424|Caenorhabditis elegans Hypothetical
           protein F55D12.4 protein.
          Length = 424

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 682 CTTI*KRSLRRSLDWTLRLLVMKVVSLQHTKQ-QGCSLS 795
           C +  KRS+RRSL +T R      + +QH  Q Q C L+
Sbjct: 74  CKSFFKRSIRRSLSYTCRATKNCAIDVQHRNQCQYCRLT 112


>EF601082-1|ABQ96204.1|  370|Caenorhabditis elegans UNC-55a isoform
           protein.
          Length = 370

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 682 CTTI*KRSLRRSLDWTLRLLVMKVVSLQHTKQ-QGCSLS 795
           C +  KRS+RRSL +T R      + +QH  Q Q C L+
Sbjct: 41  CKSFFKRSIRRSLSYTCRATKNCAIDVQHRNQCQYCRLT 79


>EF601077-1|ABQ96199.1|  357|Caenorhabditis elegans UNC-55b isoform
           protein.
          Length = 357

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 682 CTTI*KRSLRRSLDWTLRLLVMKVVSLQHTKQ-QGCSLS 795
           C +  KRS+RRSL +T R      + +QH  Q Q C L+
Sbjct: 41  CKSFFKRSIRRSLSYTCRATKNCAIDVQHRNQCQYCRLT 79


>U56864-1|AAB04059.1|  355|Caenorhabditis elegans EGL-30 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 730 ESNPNFSLMIFFKWWYTSEPILMASLKVDAPVGKIMNSCMASLFPACDPP 581
           ES   F  +I + W+  S  IL  + K D    KI+ S +A  FP  D P
Sbjct: 246 ESKALFRTIITYPWFTNSSVILFLNKK-DLLEEKILYSHLADYFPEYDGP 294


>AY008139-1|AAG32092.1|  355|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 730 ESNPNFSLMIFFKWWYTSEPILMASLKVDAPVGKIMNSCMASLFPACDPP 581
           ES   F  +I + W+  S  IL  + K D    KI+ S +A  FP  D P
Sbjct: 246 ESKALFRTIITYPWFTNSSVILFLNKK-DLLEEKILYSHLADYFPEYDGP 294


>AF003739-2|AAM15593.1|  303|Caenorhabditis elegans Egg laying
           defective protein 30,isoform b protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 730 ESNPNFSLMIFFKWWYTSEPILMASLKVDAPVGKIMNSCMASLFPACDPP 581
           ES   F  +I + W+  S  IL  + K D    KI+ S +A  FP  D P
Sbjct: 194 ESKALFRTIITYPWFTNSSVILFLNKK-DLLEEKILYSHLADYFPEYDGP 242


>AF003739-1|AAB58071.1|  355|Caenorhabditis elegans Egg laying
           defective protein 30,isoform a protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 730 ESNPNFSLMIFFKWWYTSEPILMASLKVDAPVGKIMNSCMASLFPACDPP 581
           ES   F  +I + W+  S  IL  + K D    KI+ S +A  FP  D P
Sbjct: 246 ESKALFRTIITYPWFTNSSVILFLNKK-DLLEEKILYSHLADYFPEYDGP 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,408,480
Number of Sequences: 27780
Number of extensions: 374587
Number of successful extensions: 1067
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)