Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16a04f
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...    26   5.3  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    26   5.3  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    26   7.0  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   7.0  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.3  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   9.3  

>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = -1

Query: 180 LSNELLIGIPSWFTMTTPITPLWAWILLIVSSTSVA----IMYEPQN*NFLPLTTHKRIT 13
           ++ E  + +P W   T  + P     L+ V +T +A    +  +PQ+ NFL +T H+ + 
Sbjct: 98  IAEEGRVYLPYWMMTTLSLEP---GDLVRVINTDIAQGSYVKLQPQSVNFLDITDHRAVL 154

Query: 12  D 10
           +
Sbjct: 155 E 155


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 150  SWFTMTTPITPLWAWILLIVSSTSVAIMYEP 58
            SWFT T P T   +  +++VS T+ A    P
Sbjct: 1097 SWFTTTVPATGTRSGSVIVVSPTAPACSSTP 1127


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 409 FSEHYLLYTGTILEPPMVIFLALRNKFSVV--DFFHW 513
           ++  Y+  +GT+ + P +I LA+RN  S    + F+W
Sbjct: 344 YTASYVANSGTLYDYPTLIRLAIRNTLSPSKDEIFNW 380


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/59 (23%), Positives = 31/59 (52%)
 Frame = +1

Query: 331  YTEHIGLNLYLQKTVG*FIIKIILYCFSEHYLLYTGTILEPPMVIFLALRNKFSVVDFF 507
            Y+ + G ++YL   +   ++   +  ++ HY+ +  T+    +  F+   ++FS VDFF
Sbjct: 1412 YSLYTGSSIYLGSRLIMMLLFGTMTVWTTHYVYFWVTMFALVICPFIYNPHQFSFVDFF 1470


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 495 GRFFSLVAVIGHKFFNGN*FITVYLEDQ*LMIKLMALNAFQTNVILVL 638
           G F +L A+I   F   + F++ +LED+ +M+  + L      + LVL
Sbjct: 351 GNFIALSALIVAPFILASSFLSRWLEDRHIMLGGLFLGILAVAIHLVL 398


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 385 IIKIILYCFSEHYLLYTGTILEPPMVIFLALRNK 486
           +I  +L   SE+Y+LY   I  P +VI   +R+K
Sbjct: 554 LIDQLLELLSEYYVLYATDISFPELVIPAIVRSK 587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,905
Number of Sequences: 5004
Number of extensions: 65680
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)