Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16a03r
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   4.0  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   6.9  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   6.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.9  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 319 TVSRVCDTLDITLRP 275
           T+SR+ D  DI LRP
Sbjct: 40  TISRILDGYDIRLRP 54


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 654 IVFKCISTNRTHYVNITFYV 713
           +V+KC+S N   Y   T  V
Sbjct: 167 VVYKCVSDNGESYAKFTISV 186


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -3

Query: 446 RQATGHGCVKFGGVRYDQVEKAKVQCKALDGIEC 345
           R  T H C    G++    E   ++ K  + +EC
Sbjct: 102 RHITLHHCYDADGIKLMNEENGVMEIKIREPVEC 135


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -3

Query: 446 RQATGHGCVKFGGVRYDQVEKAKVQCKALDGIEC 345
           R  T H C    G++    E   ++ K  + +EC
Sbjct: 102 RHITLHHCYDADGIKLMNEENGVMEIKIREPVEC 135


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 97  GFQLLPSSGCRLLVINNTTSTIHQIPSPPRVKSFPT 204
           G QL PS+G  +  I N ++     P P    S PT
Sbjct: 406 GGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPT 441



 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 482 DEPIDHKGNHTARQATGHGCVKFGG 408
           ++P+D   N       GHG  K+ G
Sbjct: 263 EKPLDVSSNDKVHPLYGHGVCKWPG 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,515
Number of Sequences: 438
Number of extensions: 4893
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)