Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16a03f
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    27   2.2  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    27   3.9  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   5.2  
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    26   6.9  

>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 374 FTLNFSFLNLIISDTSKFDATMACGLPGGVI 282
           F++N S   +I    S  D T+ACG  GG++
Sbjct: 118 FSINESPYPIIAVSQSPIDKTIACGFGGGLV 148


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 622 SGCRLLVINNTTSTIHQIPSPPRVKSFPTAVP 527
           SG   LV   T  T+H     P   SFP+A+P
Sbjct: 25  SGAEDLVNTLTAHTVHPSTELPSATSFPSALP 56


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 389 NSIQGFTLNFSFLNLIISDTSKFDATMACGLPGGVIPFMVD 267
           N+ +GF L  S      SD  K  ++    LP   IPF VD
Sbjct: 104 NTSKGFHLQSSDKKYADSDRPKLSSSSLLSLPDQKIPFPVD 144


>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 170

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 725 LYS-FNYNNNESISFFDEIPYIQVLLNIWI 639
           LYS F+Y  N  I+F D IP++  +L I I
Sbjct: 44  LYSAFDYARNLHITFIDWIPFLCSILGIVI 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,197,712
Number of Sequences: 5004
Number of extensions: 67066
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)